diff --git a/batchRequestClient.py b/batchRequestClient.py
new file mode 100644
index 0000000..03f7fad
--- /dev/null
+++ b/batchRequestClient.py
@@ -0,0 +1,85 @@
+#!/usr/bin/env python3
+
+# A simple client application that does the following:
+# - Loads a text file containing one variant per row
+# - Performs a batch lookups to the Saphetor Variant API using N variants at a time. 
+# - Saves the results in a new file.
+#
+# It uses the following module:
+# variantapi.client (https://github.com/saphetor/variant-api-client-python)
+#
+# Note: To sort output json file execute:
+# jq -S '.' output.txt  > output_sorted.txt
+
+import argparse
+import json
+import logging
+import re
+import sys
+import operator
+from sys import argv
+from variantapi.client import VariantAPIClient
+
+__author__ = 'stephanos-androutsellis'
+
+# Declare reference genome as a global variable
+_ref_genome = 1019
+
+
+def main(argv):
+	# Read and parse arguments
+	infile = ''
+	outfile = ''
+	batch_size = 5000
+
+	parser = argparse.ArgumentParser(description='Simple batch lookup Client application')
+	parser.add_argument('-i', help='Input file', type=str, metavar='Input File', required=True)
+	parser.add_argument('-o', help='Output file', type=str, metavar='Output File', required=True)
+	parser.add_argument('-n', help="Number of variants to batch", type=int, metavar='Batch size', required=True,default=5000)
+	parser.add_argument('-k', help='Your key to the API', type=str, metavar='API Key', required=False)
+	parser.add_argument('-g', help='Reference genome either 1019 (default) or 1038', type=int, 
+		metavar='Reference Genome', required=False, default=1019)
+
+	args = parser.parse_args()
+	infile = args.i
+	outfile = args.o
+	batch_size = args.n if args.n is not None else batch_size
+	api_key = args.k
+	ref_genome = args.g if args.g is not None else _ref_genome
+
+	# Open and load input file into list
+	print("Reading input file ", infile)
+	with open(infile) as fi:
+		variants = fi.readlines()
+	variants = [v.strip('\n') for v in variants]
+
+	# Prepare output for writing.
+	print("Opening output file ", outfile)
+	fo = open(outfile,'w')
+
+	# Initialize client connection to API
+	api = VariantAPIClient(api_key)
+	if (api is None):
+		print("Failed to connect to API")
+		sys.exit()
+
+	batch_counter = 0
+	finished = False
+	while not finished:
+		start_index = batch_counter*batch_size
+		end_index = (batch_counter+1)*batch_size
+		if (end_index > len(variants)):
+			end_index = len(variants)
+			finished = True
+		print(start_index, ":", end_index-1)
+		batch_variants = variants[start_index:end_index]
+		print("Lookup for: ", batch_variants, "with ref_genome= ", ref_genome)
+		batch_data = api.batch_lookup(batch_variants, ref_genome=ref_genome)
+
+		fo.write(json.dumps(batch_data, indent=2))
+		batch_counter += 1
+
+	print ("Finished ", batch_counter, " batch lookups")
+
+if __name__ == '__main__':
+    main(argv)
diff --git a/sample.vcf b/sample.vcf
new file mode 100644
index 0000000..94cd3d1
--- /dev/null
+++ b/sample.vcf
@@ -0,0 +1,2132 @@
+##fileformat=VCFv4.1
+##FILTER=<ID=LowQual,Description="Low quality">
+##FILTER=<ID=VQSRTrancheINDEL99.00to99.90,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -2.4085 <= x < 0.0794">
+##FILTER=<ID=VQSRTrancheINDEL99.90to100.00+,Description="Truth sensitivity tranche level for INDEL model at VQS Lod < -1678.3953">
+##FILTER=<ID=VQSRTrancheINDEL99.90to100.00,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -1678.3953 <= x < -2.4085">
+##FILTER=<ID=VQSRTrancheSNP99.00to99.90,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -1.501 <= x < 0.319">
+##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -1474.3646">
+##FILTER=<ID=VQSRTrancheSNP99.90to100.00,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -1474.3646 <= x < -1.501">
+##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine=<ID=ApplyRecalibration,Version=3.3-0-g37228af,Date="Tue Jun 30 08:48:57 CEST 2015",Epoch=1435646937859,CommandLineOptions="analysis_type=ApplyRecalibration input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ref/genomes/hg19/hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false input=[(RodBinding name=input source=gatk/raw.variants.vcf)] recal_file=(RodBinding name=recal_file source=gatk/recalibrate_SNP.recal) tranches_file=gatk/recalibrate_SNP.tranches out=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub ts_filter_level=99.0 lodCutoff=null ignore_filter=null ignore_all_filters=false excludeFiltered=false mode=SNP filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##GATKCommandLine=<ID=ApplyRecalibration,Version=3.3-0-g37228af,Date="Tue Jun 30 08:49:46 CEST 2015",Epoch=1435646986265,CommandLineOptions="analysis_type=ApplyRecalibration input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ref/genomes/hg19/hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false input=[(RodBinding name=input source=gatk/recalibrated_snps_raw_indels.vcf)] recal_file=(RodBinding name=recal_file source=gatk/recalibrate_INDEL.recal) tranches_file=gatk/recalibrate_INDEL.tranches out=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub ts_filter_level=99.0 lodCutoff=null ignore_filter=null ignore_all_filters=false excludeFiltered=false mode=INDEL filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##GATKCommandLine=<ID=HaplotypeCaller,Version=3.3-0-g37228af,Date="Tue Jun 30 02:53:50 CEST 2015",Epoch=1435625630685,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[bam/recalibrated.bam] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[BadCigar] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/ref/genomes/hg19/hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false out=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN graphOutput=null bamOutput=null bamWriterType=CALLED_HAPLOTYPES disableOptimizations=false dbsnp=(RodBinding name=dbsnp source=/ref/genomes/hg19/broad/dbsnp_138.hg19.vcf) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[ClippingRankSumTest, DepthPerSampleHC] excludeAnnotation=[SpanningDeletions, TandemRepeatAnnotator] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 max_alternate_alleles=6 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 minPruning=2 gcpHMM=10 includeUmappedReads=false useAllelesTrigger=false phredScaledGlobalReadMismappingRate=45 maxNumHaplotypesInPopulation=128 mergeVariantsViaLD=false doNotRunPhysicalPhasing=true pair_hmm_implementation=VECTOR_LOGLESS_CACHING keepRG=null justDetermineActiveRegions=false dontGenotype=false errorCorrectKmers=false debugGraphTransformations=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false allowCyclesInKmerGraphToGeneratePaths=false noFpga=false errorCorrectReads=false kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=1000 minReadsPerAlignmentStart=5 activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the negative training set of bad variants">
+##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the positive training set of good variants">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
+##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log odds ratio of being a true variant versus being false under the trained gaussian mixture model">
+##INFO=<ID=culprit,Number=1,Type=String,Description="The annotation which was the worst performing in the Gaussian mixture model, likely the reason why the variant was filtered out">
+##contig=<ID=chrM,length=16571,assembly=hg19>
+##contig=<ID=chr1,length=249250621,assembly=hg19>
+##contig=<ID=chr2,length=243199373,assembly=hg19>
+##contig=<ID=chr3,length=198022430,assembly=hg19>
+##contig=<ID=chr4,length=191154276,assembly=hg19>
+##contig=<ID=chr5,length=180915260,assembly=hg19>
+##contig=<ID=chr6,length=171115067,assembly=hg19>
+##contig=<ID=chr7,length=159138663,assembly=hg19>
+##contig=<ID=chr8,length=146364022,assembly=hg19>
+##contig=<ID=chr9,length=141213431,assembly=hg19>
+##contig=<ID=chr10,length=135534747,assembly=hg19>
+##contig=<ID=chr11,length=135006516,assembly=hg19>
+##contig=<ID=chr12,length=133851895,assembly=hg19>
+##contig=<ID=chr13,length=115169878,assembly=hg19>
+##contig=<ID=chr14,length=107349540,assembly=hg19>
+##contig=<ID=chr15,length=102531392,assembly=hg19>
+##contig=<ID=chr16,length=90354753,assembly=hg19>
+##contig=<ID=chr17,length=81195210,assembly=hg19>
+##contig=<ID=chr18,length=78077248,assembly=hg19>
+##contig=<ID=chr19,length=59128983,assembly=hg19>
+##contig=<ID=chr20,length=63025520,assembly=hg19>
+##contig=<ID=chr21,length=48129895,assembly=hg19>
+##contig=<ID=chr22,length=51304566,assembly=hg19>
+##contig=<ID=chrX,length=155270560,assembly=hg19>
+##contig=<ID=chrY,length=59373566,assembly=hg19>
+##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
+##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
+##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
+##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
+##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
+##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
+##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
+##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
+##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
+##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
+##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
+##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
+##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
+##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
+##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
+##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
+##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
+##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
+##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
+##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
+##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
+##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
+##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
+##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
+##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
+##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
+##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
+##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
+##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
+##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
+##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
+##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
+##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
+##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
+##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
+##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
+##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
+##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
+##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
+##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
+##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
+##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
+##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
+##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
+##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
+##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
+##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
+##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
+##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
+##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
+##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
+##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
+##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
+##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
+##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
+##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
+##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
+##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
+##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
+##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
+##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
+##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
+##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
+##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
+##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
+##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
+##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
+##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
+##reference=file:///ref/genomes/hg19/hg19.fa
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR309291
+chr6	44387517	rs6923521	C	G	184.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SOR=3.912;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
+chr6	44410746	rs61581947	GT	G	17.78	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.93;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
+chr6	44453701	rs60176543	G	A	15.65	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=7.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr6	44505655	rs9296442	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	44526440	rs991234	A	C	36.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.37;SOR=0.693;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
+chr6	44532454	rs76750540	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44547060	rs67452991	C	T	102.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.51;SOR=0.693;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
+chr6	44562107	rs491616	G	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:28:40,0,28
+chr6	44575012	rs636287	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44584484	rs634631	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44585311	rs648579	T	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=8.91;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	44586011	rs651831	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44586363	rs6913259	C	T	171.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SOR=3.611;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
+chr6	44595393	rs1767788	C	T	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	44605066	rs6934182	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44605461	rs4714809	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44629576	rs4257850	A	G	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SOR=2.303;VQSLOD=9.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	44635852	rs4711794	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44640206	rs527082	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44775098	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44780682	rs622923	G	T	14.68	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=7.34;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
+chr6	44780701	rs559322	C	T	15.65	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=7.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr6	44781313	rs5875893	G	GA	15.82	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=3.95;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
+chr6	44797271	rs9369514	C	A	241.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SOR=2.584;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:270,21,0
+chr6	44825715	rs9395051	C	A	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.76;SOR=0.693;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	44834094	rs3846896	G	A	15.65	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=7.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr6	44840376	rs1293588	A	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=2.303;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	44888740	rs608941	C	T	94.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SOR=1.179;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
+chr6	44899632	rs679713	T	C	1144.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SOR=6.666;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1173,81,0
+chr6	44900253	rs3799986	A	G	188.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SOR=3.611;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
+chr6	44903248	rs10948186	C	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=2.303;VQSLOD=8.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	44921320	rs10948187	C	T	89.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SOR=2.833;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
+chr6	44921962	rs625782	T	C	65.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.76;SOR=2.833;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
+chr6	44935341	rs636845	C	T	60.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.09;SOR=1.179;VQSLOD=8.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
+chr6	44952716	rs5875900	GT	G	29.71	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.85;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
+chr6	44972729	rs1159132	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	44988149	rs1475534	C	T	529.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SOR=5.421;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:558,42,0
+chr6	45003928	rs4398713	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45020697	rs2149872	A	G	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	45066168	rs150556986	G	A	167.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.194;DB;DP=14;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.194;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.968;SOR=1.402;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,294
+chr6	45073967	rs2396381	A	G	88.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SOR=2.833;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
+chr6	45090876	.	T	C	19.79	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.89;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
+chr6	45159414	rs11321900	TA	T	24.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	45163350	rs1748242	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45170121	rs1284955	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45175908	rs9381373	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45177025	rs2396425	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45192941	rs6911320	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45203918	rs6937317	T	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.303;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	45268574	rs111541141	T	TAAGAC	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	45360194	rs9395099	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45390962	rs11498196	C	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	45444061	rs2677110	C	T	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	45444083	rs35663521	G	GA	38.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.35;SOR=0.693;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	45456564	rs12215249	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45486207	rs7771889	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45511541	rs10948238	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45519443	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45521733	rs1201807	C	T	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=2.303;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	45521847	rs70996341	ATGTG	A	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=26.85;SOR=2.303;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	45523928	rs675613	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45523947	rs5875926	G	GA	24.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	45564510	rs713270	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45609347	.	G	GT	22.73	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=11.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0
+chr6	45705659	rs829913	T	A	96.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.179;VQSLOD=7.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
+chr6	45733276	rs6942337	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45749983	rs9357491	A	G	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.303;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	45754997	rs1037281	A	C	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=0.693;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	45764956	rs11276783	ACAGGGCAGCT	A	98.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SOR=2.833;VQSLOD=7.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	45769869	rs10948257	G	A	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=2.303;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	45792170	rs12197564	G	T	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=6.86;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	45808216	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45833836	rs142466444	TTTTC	T	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.727;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:43:123,0,43
+chr6	45847678	rs2396559	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45851886	rs1932042	C	T	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	45858548	rs71566550	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45870999	rs35735653	CAG	C	269.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.457;DB;DP=33;FS=4.212;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.588;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=0.239;SOR=1.802;VQSLOD=2.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,9:31:99:307,0,882
+chr6	45888576	rs34155361	ATGC	A	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	45893031	rs6939554	C	T	35.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.87;SOR=0.693;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
+chr6	45901916	rs9349337	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45909139	rs11421773	C	CG	234.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SOR=2.833;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:27:272,27,0
+chr6	45914028	rs3777582	A	T	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.72;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	45915413	rs1890368	C	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	45915504	rs1890369	A	C	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=8.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	45919719	rs3777587	A	G	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SOR=2.303;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	45919758	rs3777588	G	A	120.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=-0.731;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.731;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=0.731;SOR=1.981;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,4:5:27:149,0,27
+chr6	45921108	rs3777590	G	C	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	45922849	rs3734206	C	T	1890.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.58;SOR=6.316;VQSLOD=6.34;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1919,141,0
+chr6	45923126	rs6909306	A	C	252.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SOR=4.407;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:281,24,0
+chr6	45965608	rs3777612	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45989366	rs1204338	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	45994992	rs1547605	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46025834	rs1535110	T	G	23.58	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.86;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:7:51,7,0
+chr6	46047269	rs9381423	T	C	124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.945;ClippingRankSum=0.453;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-1.586;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=1.586;SOR=0.223;VQSLOD=4.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:99:153,0,375
+chr6	46047458	rs3734207	C	T	3075.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.190;ClippingRankSum=-0.231;DB;DP=213;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-1.583;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.457;SOR=0.754;VQSLOD=1.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:107,105:212:99:3104,0,3533
+chr6	46048000	rs1416165	T	C	2778.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.171;ClippingRankSum=0.218;DB;DP=172;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.131;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-1.044;SOR=0.794;VQSLOD=1.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:74,98:172:99:2807,0,2169
+chr6	46107115	rs61381984	A	AT	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=4;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=3.01;ReadPosRankSum=0.736;SOR=2.225	GT:AD:DP:GQ:PL	0/1:1,2:3:20:49,0,20
+chr6	46107312	rs11752816	G	A	1890.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.790;ClippingRankSum=0.077;DB;DP=125;FS=3.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.580;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.351;SOR=0.335;VQSLOD=2.14;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:62,63:125:99:1919,0,1762
+chr6	46107752	rs7451713	C	G	5119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.032;ClippingRankSum=-2.826;DB;DP=301;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.805;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.708;SOR=0.792;VQSLOD=1.55;culprit=DP	GT:AD:DP:GQ:PL	0/1:146,155:301:99:5148,0,4240
+chr6	46110821	rs7769902	A	G	202.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;ClippingRankSum=0.380;DB;DP=19;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.211;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.549;SOR=0.321;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:231,0,378
+chr6	46110844	rs35942390	T	TGA	174.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=-0.444;DB;DP=27;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=1.467;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=-0.853;SOR=0.307;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:212,0,429
+chr6	46124799	rs9367237	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46129345	rs2235881	G	A	4707.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.532;ClippingRankSum=-0.307;DB;DP=317;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=0.655;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=2.066;SOR=0.698;VQSLOD=1.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:162,154:316:99:4736,0,4689
+chr6	46135489	rs6926570	T	C	3065.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.245;ClippingRankSum=0.018;DB;DP=187;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.009;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=1.610;SOR=0.809;VQSLOD=2.66;culprit=DP	GT:AD:DP:GQ:PL	0/1:96,91:187:99:3094,0,2997
+chr6	46135984	rs3806995	G	T	1685.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.855;ClippingRankSum=-0.003;DB;DP=117;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.406;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=2.665;SOR=0.727;VQSLOD=4.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1714,0,1985
+chr6	46148778	rs34512199	AT	A	24.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	46170924	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46206776	rs55832349	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46219283	rs6910477	G	A	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=2.303;VQSLOD=8.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	46259017	rs11389800	G	GT	13.89	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=4.63;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
+chr6	46293328	rs2277121	G	A	717.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SOR=5.994;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:746,57,0
+chr6	46296710	rs6906742	C	T	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	46302975	rs60870663	T	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	46302987	rs58585138	A	G	46.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.37;SOR=2.303;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr6	46312875	rs9367242	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46321514	.	T	C	20.78	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.39;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	46326865	.	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46456536	rs9349362	C	T	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:34:62,0,34
+chr6	46462514	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46469927	rs59470467	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46470622	rs67200907	G	A	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.303;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	46479322	rs1609661	A	G	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	46490097	rs4714943	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46512200	.	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46521602	rs699939	C	A	599.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.640;ClippingRankSum=0.714;DB;DP=46;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-0.647;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=2.186;SOR=0.911;VQSLOD=2.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,19:46:99:628,0,724
+chr6	46563817	rs7761731	A	T	3102.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;ClippingRankSum=-1.345;DB;DP=194;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=0.519;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.699;SOR=0.739;VQSLOD=2.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:90,104:194:99:3131,0,2802
+chr6	46607081	rs3085602	AT	A	645.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SOR=6.091;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:683,60,0
+chr6	46620252	rs12192544	C	G	5715.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.485;DB;DP=440;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-2.934;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.818;SOR=0.805;VQSLOD=-9.355e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:239,200:439:99:5744,0,6851
+chr6	46623698	rs3757241	T	C	6720.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=183;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SOR=0.822;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,179:179:99:6749,538,0
+chr6	46625274	rs9381468	A	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=9.35;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	46626353	rs953062	A	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	46630068	rs9381469	G	A	907.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.991;ClippingRankSum=-0.318;DB;DP=68;FS=14.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.231;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=1.115;SOR=3.003;VQSLOD=1.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,28:68:99:936,0,1206
+chr6	46637908	rs200254015	A	C	76.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.158;ClippingRankSum=-1.074;DB;DP=72;FS=148.770;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-0.756;QD=1.07;ReadPosRankSum=-5.463;SOR=5.781;VQSLOD=-4.745e+01;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,17:72:99:105,0,1883
+chr6	46649231	rs7740677	C	T	6652.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=183;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SOR=2.067;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,183:183:99:6681,550,0
+chr6	46657057	rs3799277	A	G	4300.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SOR=1.350;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4329,334,0
+chr6	46658905	rs9381472	C	G	2370.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=-1.243;DB;DP=147;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.165;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.979;SOR=1.036;VQSLOD=2.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:77,70:147:99:2399,0,2735
+chr6	46661937	rs55724083	CT	C	307.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.615;DB;DP=81;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-0.913;POSITIVE_TRAIN_SITE;QD=3.80;ReadPosRankSum=0.542;SOR=3.026;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,30:36:22:345,0,22
+chr6	46672205	.	TCTCTCTCTCTCA	T	62.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.361;DP=48;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.85;MQ0=0;MQRankSum=-1.307;QD=1.31;ReadPosRankSum=2.219;SOR=0.892;VQSLOD=2.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,5:20:99:100,0,440
+chr6	46672452	rs148052037	TAATC	T	1973.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=1.355;DB;DP=107;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-2.444;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-0.854;SOR=0.718;VQSLOD=3.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,52:103:99:2011,0,3030
+chr6	46672943	rs1051931	A	G	6548.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.43;SOR=1.172;VQSLOD=3.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,170:170:99:6577,511,0
+chr6	46676019	rs2216465	C	G	430.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;ClippingRankSum=0.241;DB;DP=29;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.548;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.022;SOR=0.518;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:459,0,615
+chr6	46682079	rs1362931	A	C	1919.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SOR=7.864;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1948,150,0
+chr6	46683978	rs41361844	T	TA	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=1.214;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=-0.419;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=1.046;SOR=0.473;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:401,0,436
+chr6	46684222	rs1805017	C	T	2595.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=-0.355;DB;DP=171;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=1.275;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.601;SOR=0.648;VQSLOD=2.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:85,85:170:99:2624,0,2396
+chr6	46685286	rs6929105	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46689762	rs9472830	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46695144	.	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46714081	rs141667902	GTTCTCC	G	187.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=31.31;SOR=1.022;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
+chr6	46727772	rs6918050	G	C	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	46730039	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46761495	rs2274656	G	A	1258.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.705;ClippingRankSum=0.492;DB;DP=66;FS=11.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.161;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.794;SOR=0.077;VQSLOD=0.934;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1287,0,859
+chr6	46766467	rs872018	G	C	826.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.387;DB;DP=45;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=0.716;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=-3.462;SOR=1.681;VQSLOD=3.22;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:855,0,1647
+chr6	46766468	rs872019	G	C	826.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=-0.670;DB;DP=46;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-0.329;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=-2.986;SOR=1.609;VQSLOD=4.20;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,22:45:99:855,0,1647
+chr6	46775361	rs2894714	A	G	95.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.76;SOR=1.179;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
+chr6	46777377	rs1833460	T	C	2742.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SOR=5.892;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2771,235,0
+chr6	46784183	rs9367257	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	46793175	rs6920863	G	A	976.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.347;ClippingRankSum=0.690;DB;DP=69;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.762;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-0.654;SOR=0.378;VQSLOD=3.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,34:69:99:1005,0,1233
+chr6	46794048	rs2297018	C	G	1559.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;ClippingRankSum=1.150;DB;DP=86;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.527;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=-0.821;SOR=0.791;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1588,0,1376
+chr6	46797329	rs2274657	G	A	1320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.675;ClippingRankSum=0.827;DB;DP=98;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-0.371;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.307;SOR=0.399;VQSLOD=3.23;culprit=DP	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1349,0,1847
+chr6	46797515	rs6903045	G	A	68.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.406;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.406;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.406;SOR=2.093;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:73:97,0,73
+chr6	46801071	rs2274658	G	T	2458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;ClippingRankSum=0.231;DB;DP=169;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.436;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=2.140;SOR=0.917;VQSLOD=2.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:89,80:169:99:2487,0,2786
+chr6	46802172	.	ATATTTATT	A	98.25	PASS	AC=2;AF=1.00;AN=2;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=32.75;SOR=2.833;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	46802370	rs4714952	G	A	4383.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.198;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,119:119:99:4412,357,0
+chr6	46802901	rs2297021	G	C	87.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=0.720;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-0.720;SOR=0.368;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:67:116,0,67
+chr6	46803018	rs2297020	A	T	292.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.040;DB;DP=32;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=0.913;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.357;SOR=1.659;VQSLOD=2.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,11:32:99:321,0,590
+chr6	46803102	rs2297019	A	G	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=-1.681;DB;DP=23;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-1.484;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.495;SOR=0.925;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:302,0,349
+chr6	46803345	rs12196017	G	A	98.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.550;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.07;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.754;SOR=0.941;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:96:127,0,96
+chr6	46806766	rs115391170	G	A	1395.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.481;DB;DP=95;FS=14.804;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=2.724;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.677;SOR=0.144;VQSLOD=-1.508e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,48:92:99:1424,0,1271
+chr6	46806802	rs143826629	G	A	1031.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;ClippingRankSum=0.523;DB;DP=71;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=0.719;QD=14.53;ReadPosRankSum=-0.144;SOR=0.401;VQSLOD=1.61;culprit=DP	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1060,0,1434
+chr6	46806809	rs1804211	C	T	1130.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.852;ClippingRankSum=0.535;DB;DP=71;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=0;MQRankSum=-0.121;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=1.122;SOR=0.995;VQSLOD=3.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1159,0,1325
+chr6	46806939	rs17468190	G	T	181.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.244;DB;DP=14;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=0;MQRankSum=-1.977;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.689;SOR=1.022;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:210,0,155
+chr6	46806948	rs150225810	G	GTTTGGGGCAGCT	230.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=19.23;SOR=3.912;VQSLOD=4.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:17:268,17,0
+chr6	46807040	rs1059276	C	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	46817550	rs6929917	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46817982	rs6458525	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	46821191	.	A	G	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:28:40,0,28
+chr6	46822349	rs475991	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46823695	rs657340	G	A	1861.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SOR=1.893;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1890,156,0
+chr6	46823805	rs58687946	A	AG	1627.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=32.55;SOR=2.511;VQSLOD=4.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1665,138,0
+chr6	46824279	rs526123	A	G	176.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=1.203;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=0;MQRankSum=-1.683;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=-0.573;SOR=1.402;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,6:9:92:205,0,92
+chr6	46824448	rs643409	A	G	2848.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SOR=1.816;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2877,250,0
+chr6	46824798	rs521502	C	G	420.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SOR=4.977;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
+chr6	46825595	rs2281443	G	A	37.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.87;SOR=2.303;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
+chr6	46825632	rs627910	G	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.37;SOR=2.303;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	46826508	rs613870	G	A	2427.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SOR=0.917;VQSLOD=7.01;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2456,202,0
+chr6	46826715	rs572248	T	A	4133.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SOR=0.881;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,114:114:99:4162,343,0
+chr6	46826844	rs571247	T	C	5230.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SOR=1.006;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,144:144:99:5259,433,0
+chr6	46826910	rs611779	G	A	4855.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.119;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4884,397,0
+chr6	46826979	rs9381487	A	G	1623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;ClippingRankSum=-0.199;DB;DP=106;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.130;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.117;SOR=1.041;VQSLOD=2.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1652,0,1669
+chr6	46827073	rs547499	A	G	1003.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=-0.887;DB;DP=64;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.699;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-0.094;SOR=0.831;VQSLOD=2.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1032,0,968
+chr6	46827126	rs610856	C	T	2450.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.98;SOR=0.966;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2479,192,0
+chr6	46827239	rs9395218	C	T	1247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=-0.087;DB;DP=83;FS=13.228;MLEAC=1;MLEAF=0.500;MQ=51.70;MQ0=0;MQRankSum=0.844;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.346;SOR=0.158;VQSLOD=1.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1276,0,1186
+chr6	46828670	rs540727	A	G	1780.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SOR=4.804;VQSLOD=6.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1809,138,0
+chr6	46830243	rs483813	T	C	95.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.179;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
+chr6	46832536	rs531049	T	C	161.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SOR=3.611;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
+chr6	46832553	rs530990	A	G	80.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SOR=2.833;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
+chr6	46832642	rs615677	A	C	985.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SOR=6.593;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1014,78,0
+chr6	46832741	rs529201	T	C	4511.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SOR=3.352;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4540,368,0
+chr6	46832813	rs614826	G	A	3006.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.723;ClippingRankSum=-0.748;DB;DP=234;FS=8.321;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=1.246;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.650;SOR=1.157;VQSLOD=1.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:127,107:234:99:3035,0,4266
+chr6	46834473	rs586986	T	G	189.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SOR=3.611;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
+chr6	46834685	rs586024	G	A	4443.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SOR=1.857;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4472,364,0
+chr6	46834906	rs5875987	TG	T	2501.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SOR=3.007;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2539,205,0
+chr6	46836406	rs665551	G	C	117.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SOR=3.258;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
+chr6	46836995	rs515866	T	C	146.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SOR=3.611;VQSLOD=6.79;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
+chr6	46839435	rs58989382	T	C	406.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=-0.174;DB;DP=24;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.927;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=2.202;SOR=0.859;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:435,0,357
+chr6	46841306	rs220675	T	C	195.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SOR=0.941;VQSLOD=5.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:224,21,0
+chr6	46846277	rs220668	G	A	565.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SOR=5.549;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:594,45,0
+chr6	46847501	rs2273265	T	G	803.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.965;ClippingRankSum=0.700;DB;DP=55;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.735;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=1.889;SOR=1.223;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,23:54:99:832,0,1017
+chr6	46849057	rs11760108	G	T	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;ClippingRankSum=0.068;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=0.299;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.201;SOR=0.693;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:220,0,248
+chr6	46852193	rs220663	C	T	254.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SOR=4.174;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
+chr6	46855734	.	C	CAGGGAAGAGGACCCAGTAGTTTATCTGCCCA	53.70	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=26.85;SOR=2.303;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	46856100	rs678312	G	A	5756.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SOR=1.091;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,152:152:99:5785,457,0
+chr6	46858081	rs9472896	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=2.303;VQSLOD=7.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	46867717	rs220702	C	T	2958.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SOR=3.316;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2987,235,0
+chr6	46867898	rs3215601	TA	T	1316.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SOR=5.892;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1354,114,0
+chr6	46869895	rs220698	T	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	46874325	rs114267112	T	G	1871.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.381;ClippingRankSum=1.525;DB;DP=109;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.943;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=2.083;SOR=0.752;VQSLOD=2.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1900,0,1690
+chr6	46895158	rs6458530	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	46928378	rs2396803	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46929606	rs1889578	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	46931019	rs4714972	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46932290	rs9472940	T	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:32:40,0,32
+chr6	46935422	rs9296519	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	46980115	rs1226479	G	A	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.365;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.133;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.741;SOR=0.412;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,220
+chr6	46986916	rs1226496	G	A	100.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.01;SOR=1.609;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
+chr6	47015046	rs1352665	G	T	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=0.693;VQSLOD=9.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	47029819	rs945217	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47037438	rs1226539	G	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	47079304	rs10948329	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47106677	.	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47116726	rs2003031	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=26.37;SOR=2.303;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	47163022	rs76480727	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47176242	rs11368956	C	CA	44.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;SOR=0.693;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	47200360	.	AAC	A	225.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.751;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-0.751;QD=12.54;ReadPosRankSum=-0.751;SOR=3.056;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,11:12:4:212,0,4
+chr6	47200703	rs202137000	A	C	155.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080;ClippingRankSum=0.291;DB;DP=89;FS=88.069;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-0.508;QD=1.75;ReadPosRankSum=-1.601;SOR=6.868;VQSLOD=-1.420e+01;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,30:89:99:184,0,1744
+chr6	47228836	rs4715001	C	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	47228912	rs10807350	G	A	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	47369341	rs4301296	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47373447	rs1931826	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47425273	rs1889494	T	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=2.303;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	47450481	rs9395261	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47462615	rs2184398	T	C	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	47464881	rs62410680	G	A	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.04;SOR=2.833;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	47464883	rs202187543	G	GT	98.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=32.75;SOR=2.833;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	47467043	rs34508069	A	ATG	34.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=11.57;SOR=0.693;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
+chr6	47470146	rs1564926	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47489866	rs62410686	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47494842	rs35617629	T	TC	24.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=8.24;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	47512229	rs6915993	C	T	472.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902;ClippingRankSum=-1.520;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.645;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-0.369;SOR=0.836;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:501,0,447
+chr6	47512590	rs6916578	C	T	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.172;ClippingRankSum=-0.793;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.340;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-0.566;SOR=1.609;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:16:99:373,0,169
+chr6	47522357	rs9473132	G	A	2114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.279;ClippingRankSum=0.098;DB;DP=140;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.117;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.616;SOR=0.874;VQSLOD=2.05;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,74:140:99:2143,0,2115
+chr6	47530422	rs9395277	A	C	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SOR=5.549;VQSLOD=6.68;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:588,45,0
+chr6	47532683	rs9395278	T	A	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=9.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	47545058	rs978448	C	T	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.406;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.988;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.406;SOR=2.093;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,105
+chr6	47548672	rs1014001	C	A	2124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.361;ClippingRankSum=1.150;DB;DP=186;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=1.434;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-1.001;SOR=0.701;VQSLOD=1.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:112,73:185:99:2153,0,3635
+chr6	47549586	rs6926592	A	T	31.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=3.53;ReadPosRankSum=-1.026;SOR=0.693;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:60:60,0,65
+chr6	47549883	rs2275446	T	C	1040.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.815;ClippingRankSum=-1.023;DB;DP=59;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.902;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.327;SOR=1.609;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,29:59:99:1069,0,967
+chr6	47563692	rs2039503	C	T	15612.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=434;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.288;VQSLOD=0.729;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,433:433:99:15641,1302,0
+chr6	47577064	rs9395287	G	A	1930.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080;ClippingRankSum=-0.414;DB;DP=155;FS=5.202;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=1.011;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.551;SOR=0.345;VQSLOD=2.02;culprit=DP	GT:AD:DP:GQ:PL	0/1:89,66:155:99:1959,0,2911
+chr6	47591856	rs10948368	T	C	837.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=1.334;DB;DP=42;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.826;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=1.309;SOR=0.151;VQSLOD=2.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,24:42:99:866,0,595
+chr6	47592328	rs11309569	GT	G	75.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SOR=1.179;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
+chr6	47611404	rs13196954	C	G	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=0.937;SOR=0.446;VQSLOD=4.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,3:7:65:65,0,111
+chr6	47611442	rs7766527	T	C	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-0.421;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.017;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.421;SOR=1.609;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:113,0,102
+chr6	47624115	rs1485782	C	T	140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.198;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-0.922;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=1.495;SOR=1.609;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:57:169,0,57
+chr6	47624129	rs1485783	G	A	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=-0.898;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-0.480;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.480;SOR=2.303;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:57:250,0,57
+chr6	47624239	rs1485784	A	G	779.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;ClippingRankSum=-1.087;DB;DP=42;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-0.455;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=-1.744;SOR=0.286;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,23:42:99:808,0,614
+chr6	47624299	rs9369730	A	G	990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;ClippingRankSum=0.405;DB;DP=68;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=-0.459;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=2.549;SOR=0.389;VQSLOD=2.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1019,0,894
+chr6	47624633	rs1021231	G	A	201.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SOR=3.912;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
+chr6	47626149	rs6934553	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47626490	rs10456129	G	C	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:30:76,0,30
+chr6	47626685	rs6935668	C	T	505.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;ClippingRankSum=-0.091;DB;DP=50;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.677;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-0.677;SOR=0.670;VQSLOD=4.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,18:50:99:534,0,1085
+chr6	47626833	rs12201065	C	A	1126.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=-0.211;DB;DP=79;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.624;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=2.098;SOR=0.509;VQSLOD=3.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:42,37:79:99:1155,0,1430
+chr6	47631622	rs2396829	G	T	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=6.86;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	47641307	rs1411049	G	C	1221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.168;ClippingRankSum=0.230;DB;DP=74;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.479;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.340;SOR=1.061;VQSLOD=4.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1250,0,1019
+chr6	47645772	rs9369734	G	T	131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.717;DB;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=1.186;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=1.031;SOR=0.551;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:160,0,198
+chr6	47646468	rs6929227	T	C	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:33:65,0,33
+chr6	47646842	rs6907125	A	G	1474.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.856;ClippingRankSum=0.375;DB;DP=112;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-0.670;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-0.351;SOR=0.896;VQSLOD=2.99;culprit=DP	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1503,0,1770
+chr6	47647004	rs6911739	C	T	236.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=-0.289;DB;DP=14;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.536;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.289;SOR=0.495;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,8:12:99:265,0,101
+chr6	47647593	rs58870329	GA	G	32.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:30:70,0,30
+chr6	47649222	rs8180544	T	G	3766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.617;ClippingRankSum=-0.635;DB;DP=262;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.348;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.474;SOR=0.706;VQSLOD=1.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:130,131:261:99:3795,0,4054
+chr6	47649265	rs17541107	T	A	4039.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;ClippingRankSum=0.331;DB;DP=283;FS=5.506;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.377;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=1.570;SOR=0.994;VQSLOD=1.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:148,135:283:99:4068,0,4356
+chr6	47649573	rs10807371	C	T	3884.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.363;ClippingRankSum=0.166;DB;DP=210;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=2.787;SOR=0.633;VQSLOD=1.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:110,99:209:99:3913,0,7372
+chr6	47649574	rs10807372	A	G	3884.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.254;ClippingRankSum=0.771;DB;DP=211;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.085;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=2.423;SOR=0.713;VQSLOD=1.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:108,102:210:99:3913,0,7372
+chr6	47649694	rs9381594	A	G	2384.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.797;DB;DP=160;FS=5.307;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.869;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.046;SOR=1.179;VQSLOD=2.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:82,78:160:99:2413,0,2636
+chr6	47653485	rs9369736	A	G	580.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.376;ClippingRankSum=-0.637;DB;DP=39;FS=6.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.099;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.119;SOR=2.200;VQSLOD=2.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:39:99:609,0,665
+chr6	47653536	rs9381596	A	G	676.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-1.699;DB;DP=50;FS=5.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.621;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.097;SOR=1.197;VQSLOD=1.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:705,0,787
+chr6	47654591	rs10948376	G	T	642.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.972;ClippingRankSum=-0.822;DB;DP=39;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.782;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-0.752;SOR=1.085;VQSLOD=3.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:671,0,497
+chr6	47654662	rs10485315	A	G	2893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.315;ClippingRankSum=0.398;DB;DP=167;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.357;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=2.188;SOR=0.957;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:84,83:167:99:2922,0,2748
+chr6	47654742	rs9296573	A	T	4359.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.866;ClippingRankSum=0.983;DB;DP=296;FS=5.331;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.493;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.261;SOR=0.468;VQSLOD=1.31;culprit=DP	GT:AD:DP:GQ:PL	0/1:143,153:296:99:4388,0,4431
+chr6	47654817	rs1556133	C	A	3193.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.266;ClippingRankSum=-0.767;DB;DP=141;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.607;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=0.439;SOR=0.716;VQSLOD=2.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,84:141:99:3222,0,2060
+chr6	47654831	rs1556132	A	G	3144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.124;ClippingRankSum=-0.737;DB;DP=121;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.550;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.045;SOR=0.730;VQSLOD=2.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,74:121:99:3173,0,1780
+chr6	47654864	rs1556131	T	G	1356.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.916;ClippingRankSum=1.761;DB;DP=69;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.023;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=-0.030;SOR=0.980;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1385,0,976
+chr6	47661115	rs6901702	T	C	90.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SOR=2.833;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
+chr6	47661248	rs36010404	AG	A	335.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SOR=4.977;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:373,33,0
+chr6	47661260	rs200900695	AC	A	126.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.354;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=-1.768;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=1.061;SOR=2.494;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:22:164,0,22
+chr6	47661387	rs9395311	A	G	2320.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;ClippingRankSum=-0.577;DB;DP=139;FS=8.901;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.615;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=2.635;SOR=0.237;VQSLOD=1.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,75:139:99:2349,0,1921
+chr6	47675922	rs16876334	C	T	1527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;ClippingRankSum=-0.373;DB;DP=82;FS=4.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.181;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.624;SOR=1.413;VQSLOD=1.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,45:82:99:1556,0,1063
+chr6	47676150	rs9369737	C	T	269.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=1.732;DB;DP=23;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.283;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.346;SOR=0.368;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:298,0,504
+chr6	47678455	rs11356177	CT	C	1687.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=-0.222;DB;DP=162;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.477;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.632;SOR=0.809;VQSLOD=1.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:80,76:156:99:1725,0,2007
+chr6	47678678	rs944056	C	G	3493.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SOR=2.758;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3522,271,0
+chr6	47678718	rs1318391	C	G	857.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.693;DB;DP=61;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.080;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.970;SOR=0.439;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,26:61:99:886,0,1329
+chr6	47678848	rs199503700	CAA	C	43.74	PASS	AC=1;AF=0.500;AN=2;DB;DP=2;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.87;SOR=2.303;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:0,2:2:25:81,0,25
+chr6	47678861	rs9381602	A	G	52.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=17.59;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:25:81,0,25
+chr6	47680450	rs871654	A	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;ClippingRankSum=-0.634;DB;DP=21;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.410;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=0.634;SOR=1.508;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:545,0,211
+chr6	47681494	rs6916562	T	C	3414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SOR=5.235;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3443,259,0
+chr6	47682604	rs9369738	A	C	6287.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SOR=1.468;VQSLOD=6.07;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,179:179:99:6316,538,0
+chr6	47682949	rs16876369	C	T	1708.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.057;ClippingRankSum=-0.481;DB;DP=110;FS=7.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.072;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.146;SOR=1.458;VQSLOD=1.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,56:110:99:1737,0,1465
+chr6	47683057	rs41452951	A	G	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=-0.209;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.070;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.070;SOR=0.460;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:405,0,546
+chr6	47684591	rs1360157	G	A	2096.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.291;DB;DP=146;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.615;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.971;SOR=0.572;VQSLOD=3.15;culprit=DP	GT:AD:DP:GQ:PL	0/1:74,71:145:99:2125,0,2159
+chr6	47686101	rs6914013	T	C	9061.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=255;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SOR=1.281;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,254:254:99:9090,763,0
+chr6	47686235	rs11754756	C	A	1895.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.892;ClippingRankSum=1.540;DB;DP=110;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=0.867;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-0.771;SOR=0.905;VQSLOD=3.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,60:110:99:1924,0,1695
+chr6	47686397	rs11476874	AT	A	63.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=-0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQ0=0;MQRankSum=0.358;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.358;SOR=1.022;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:66:101,0,66
+chr6	47690579	rs1329522	T	C	91.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.76;SOR=0.693;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:119,12,0
+chr6	47690601	rs35597357	T	C	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.026;QD=7.44;ReadPosRankSum=0.000;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:37:58,0,37
+chr6	47690613	rs1329523	G	A	81.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SOR=1.179;VQSLOD=8.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
+chr6	47696780	rs2282337	C	T	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;ClippingRankSum=-0.720;DB;DP=6;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=-0.720;SOR=2.303;VQSLOD=2.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,81
+chr6	47698280	rs1329540	G	A	94.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SOR=1.179;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
+chr6	47698303	rs1329539	C	T	94.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SOR=1.179;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
+chr6	47703969	rs949680	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47707247	rs72864549	C	T	37.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.87;SOR=2.303;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
+chr6	47708230	rs12199415	A	G	96.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.179;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
+chr6	47708267	rs9473166	C	T	93.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SOR=1.179;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
+chr6	47712313	rs9349429	T	G	41.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.87;SOR=2.303;VQSLOD=8.76;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
+chr6	47714073	rs9367302	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47720533	rs61744507	G	A	144.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-1.652;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.361;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.881;SOR=0.892;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:173,0,134
+chr6	47720824	rs2039141	A	G	2982.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SOR=1.697;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3011,247,0
+chr6	47740398	rs1329529	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47746444	rs10485318	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47749539	rs9395320	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=9.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	47749728	rs7741473	T	G	1371.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.498;ClippingRankSum=1.007;DB;DP=64;FS=3.910;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=0.168;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-0.210;SOR=0.253;VQSLOD=2.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,41:64:99:1400,0,654
+chr6	47754498	rs1329543	A	G	352.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.647;ClippingRankSum=-0.208;DB;DP=26;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.052;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.052;SOR=0.446;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:381,0,529
+chr6	47754538	rs6900985	T	C	166.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=-1.156;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.653;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.653;SOR=0.293;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,6:17:99:195,0,378
+chr6	47763514	rs139235050	TCACACA	T	98.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=19.65;SOR=2.833;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	47808012	rs474725	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47822105	rs532671	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47826378	rs476873	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47841953	rs4715047	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47845813	rs1887899	G	T	171.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SOR=3.611;VQSLOD=7.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
+chr6	47847179	rs3799276	A	G	11221.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=302;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.02;SOR=1.221;VQSLOD=2.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,301:301:99:11250,905,0
+chr6	47847401	rs2068006	A	G	6414.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=184;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SOR=0.832;VQSLOD=4.02;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6443,547,0
+chr6	47847683	rs9367307	A	T	3379.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.80;SOR=3.095;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3408,364,0
+chr6	47862643	rs113155505	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47865882	rs4715053	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47869426	rs1360080	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=9.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	47869448	rs1360081	G	A	125.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SOR=1.609;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
+chr6	47871871	rs13194591	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	47871877	.	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	47927739	.	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47941339	rs2753188	G	A	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	47954722	rs2145363	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	47977018	rs2753194	C	A	684.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070;ClippingRankSum=1.380;DB;DP=36;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.995;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=1.508;SOR=1.061;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,21:36:99:713,0,543
+chr6	47977136	rs45599036	C	T	79.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.727;SOR=1.609;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:26:108,0,26
+chr6	48005879	rs12205869	G	A	45.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.87;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	48009812	.	A	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	48015295	rs618543	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48015693	rs332554	A	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	48026377	rs647942	A	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	48032884	rs75735764	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48036051	rs201541883	A	C	779.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.322;ClippingRankSum=-0.178;DB;DP=120;FS=165.662;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-0.683;QD=6.50;ReadPosRankSum=-4.265;SOR=8.379;VQSLOD=-6.204e+01;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,65:117:99:808,0,1315
+chr6	48083008	rs6908563	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	48117685	rs12523977	C	G	501.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.073;DB;DP=38;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.833;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-2.675;SOR=1.329;VQSLOD=1.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,18:38:99:530,0,640
+chr6	48131753	rs1331118	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48172099	.	G	GGGA	46.70	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=23.35;SOR=0.693;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	48195386	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48214766	rs2456916	A	G	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:33:67,0,33
+chr6	48214812	rs2503669	C	G	78.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.937;DB;DP=7;FS=15.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.550;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.300;SOR=2.775;VQSLOD=0.030;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,141
+chr6	48214977	rs2503670	A	G	44.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.026;SOR=0.693;VQSLOD=6.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:71:73,0,71
+chr6	48215008	rs2496375	G	A	41.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=1.026;SOR=0.693;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,71
+chr6	48225108	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48262773	rs13202212	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48282517	rs11758955	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48282542	rs545090	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48396334	rs9473361	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48445933	rs1121646	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48448275	rs9473387	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48449928	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48450548	rs9784854	G	A	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=2.303;VQSLOD=7.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	48456067	rs148792649	CAGTCTTGAAGACAAAATGCTAACATGTAATAAGAAAATATTTGA	C	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=26.85;SOR=2.303;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	48456290	rs7754822	G	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	48456315	rs9473391	A	T	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	48464593	rs9473403	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48467616	rs12206390	A	G	65.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.76;SOR=1.179;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
+chr6	48468120	rs6915049	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48592097	.	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48596846	rs2912621	T	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	48609036	rs963049	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48615474	rs2433657	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48750072	rs2495881	T	C	75.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.09;SOR=2.833;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
+chr6	48792612	rs2495863	C	T	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	48811854	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48825657	rs1938202	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48899692	rs10948458	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	48919773	rs16878430	G	A	235.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;ClippingRankSum=-0.212;DB;DP=16;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.318;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-1.059;SOR=0.525;VQSLOD=3.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:264,0,243
+chr6	48920376	rs12204534	C	T	96.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SOR=2.833;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
+chr6	49011686	rs35984632	A	AT	50.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=16.75;SOR=1.179;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
+chr6	49022228	rs6458657	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49036510	rs12194577	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49045630	rs9367346	A	T	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=-1.379;DB;DP=53;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.098;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=2.233;SOR=0.793;VQSLOD=5.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,26:53:99:818,0,792
+chr6	49052341	rs6458676	A	G	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.358;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-0.358;SOR=1.179;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,3:5:34:67,0,34
+chr6	49083404	.	A	G	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.026;QD=10.94;ReadPosRankSum=1.026;SOR=0.693;VQSLOD=3.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:61:72,0,61
+chr6	49169185	rs113197207	C	CTTCT	77.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SOR=0.693;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:9:114,9,0
+chr6	49199384	rs570913	T	G	15.65	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr6	49209747	rs9463466	G	T	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	49212193	rs492254	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49218084	rs7756663	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	49218093	rs11453208	A	AT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	49397107	.	A	G	12.06	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:26:40,0,26
+chr6	49414272	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49415351	.	TA	T	91.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=-0.501;DP=115;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=0.642;POSITIVE_TRAIN_SITE;QD=0.80;ReadPosRankSum=0.146;SOR=0.653;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:57,17:74:99:129,0,1146
+chr6	49437853	rs11333073	AT	A	27.74	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=-0.483;DB;DP=50;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=0.985;QD=0.55;ReadPosRankSum=0.770;SOR=0.976	GT:AD:DP:GQ:PL	0/1:38,8:46:65:65,0,808
+chr6	49456545	rs2501965	G	A	816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.39;SOR=6.273;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:845,66,0
+chr6	49459978	rs2501968	A	G	4668.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SOR=1.981;VQSLOD=6.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4697,373,0
+chr6	49460152	rs1471539	A	G	177.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.65;SOR=3.611;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
+chr6	49479750	rs13193063	T	C	340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SOR=1.445;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:369,36,0
+chr6	49479775	rs1480615	A	T	224.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SOR=2.584;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
+chr6	49480339	rs9463493	A	G	64.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.43;SOR=1.179;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
+chr6	49494241	rs9367359	A	G	3361.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SOR=0.826;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3390,283,0
+chr6	49495862	rs6458696	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49497461	rs2396905	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49508103	rs9463500	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49515525	rs4715136	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49518914	rs6919674	C	G	44.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.37;SOR=2.303;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
+chr6	49522920	.	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49528183	rs6899583	A	G	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=7.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	49537956	rs36081197	T	A	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	49559793	rs10948514	G	T	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	49596219	rs4711931	T	C	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	49646966	rs7763840	T	C	66.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.09;SOR=1.179;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
+chr6	49650193	rs148454607	CCCT	C	84.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.727;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQ0=0;MQRankSum=0.727;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.727;SOR=0.916;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:37:122,0,37
+chr6	49660418	rs12624	A	C	1647.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=-1.338;DB;DP=95;FS=5.883;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-1.323;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.011;SOR=1.333;VQSLOD=1.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,53:95:99:1676,0,1201
+chr6	49663465	rs2248263	G	A	603.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;ClippingRankSum=0.133;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.399;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.589;SOR=0.957;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:632,0,410
+chr6	49665120	rs10548881	GGT	G	34.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=11.57;SOR=2.303;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
+chr6	49666381	rs515257	G	A	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=-1.798;DB;DP=19;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.395;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=1.184;SOR=0.223;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,6:19:99:174,0,478
+chr6	49668405	rs57295760	T	G	1149.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.101;ClippingRankSum=0.570;DB;DP=174;FS=322.757;MLEAC=1;MLEAF=0.500;MQ=47.79;MQ0=0;MQRankSum=-5.344;QD=6.61;ReadPosRankSum=-6.450;SOR=9.149;VQSLOD=-2.485e+02;culprit=FS	GT:AD:DP:GQ:PL	0/1:77,96:173:99:1178,0,1978
+chr6	49676536	rs699954	C	T	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=0.693;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	49693598	rs1068276	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	49693612	rs35883674	CT	C	93.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SOR=1.179;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
+chr6	49695232	rs510770	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49701439	rs1864312	C	A	1555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.346;DB;DP=113;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.795;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.613;SOR=0.978;VQSLOD=2.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1584,0,2066
+chr6	49701523	rs495335	A	G	1861.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;ClippingRankSum=-0.565;DB;DP=149;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.400;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=3.925;SOR=0.775;VQSLOD=2.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:84,65:149:99:1890,0,2674
+chr6	49703027	rs3823210	G	T	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=-0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.358;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-1.231;SOR=1.022;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:72:102,0,72
+chr6	49787315	rs5876131	G	GT	25.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.86;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
+chr6	49798102	.	C	CAGAG	53.70	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	49803370	rs1652094	A	G	290.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SOR=4.407;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
+chr6	49807422	rs7753886	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49815873	rs373553362	AT	A	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=-0.384;DB;DP=85;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=1.200;QD=1.01;ReadPosRankSum=0.512;SOR=1.508;VQSLOD=1.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,14:66:99:123,0,1132
+chr6	49818670	rs780782	T	C	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	49835335	rs1084051	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	49858594	rs2153575	C	T	361.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=1.977;DB;DP=21;FS=4.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.037;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-0.336;SOR=0.127;VQSLOD=3.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:390,0,186
+chr6	49913981	rs7760672	C	T	1758.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.016;ClippingRankSum=0.747;DB;DP=119;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.359;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.178;SOR=0.963;VQSLOD=3.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1787,0,1869
+chr6	49917264	rs9369926	A	C	219.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=-1.220;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.732;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=1.317;SOR=0.425;VQSLOD=5.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:248,0,336
+chr6	49956510	.	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50045305	rs1324514	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50064359	rs9395549	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50087752	rs6458721	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50155014	.	T	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:29:40,0,29
+chr6	50155159	rs700005	A	C	44.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.37;SOR=0.693;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
+chr6	50158759	rs142079970	G	GT	21.73	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.87;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
+chr6	50164244	rs9369936	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50169217	rs148924218	C	CT	19.75	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
+chr6	50197539	rs6910805	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50222518	rs1340844	T	C	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=7.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	50225593	rs9349526	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50230041	rs1596084	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50230068	rs7756066	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50231408	rs6903689	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50261294	rs2792835	T	C	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=9.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	50265655	rs5876165	GA	G	21.73	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=10.87;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
+chr6	50294995	rs10637978	A	ATAATT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=8.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	50298895	rs7775569	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50325057	rs2131281	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=9.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	50362460	rs7745382	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50364398	rs6930590	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50366720	rs7738992	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50650700	rs537362	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50805942	rs2817404	T	G	938.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SOR=6.358;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:967,69,0
+chr6	50810497	rs1569778	T	C	85.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SOR=2.833;VQSLOD=7.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
+chr6	50811241	rs2982621	T	A	306.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=4.615;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
+chr6	50812003	rs35732696	TA	T	11.99	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=4.00;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	50824804	rs2817423	T	A	1009.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SOR=6.666;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1038,81,0
+chr6	50866066	rs11754505	C	T	130.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SOR=1.609;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
+chr6	50880250	rs61678343	C	CT	116.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=16.70;SOR=3.611;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:154,15,0
+chr6	50886019	rs75756982	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	50966615	rs557411	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51003728	rs140549964	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51003757	.	T	A	62.74	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51003762	rs145721769	T	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51162298	rs1409888	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51171408	rs1327265	G	A	95.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.179;VQSLOD=9.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
+chr6	51173538	rs2256042	G	A	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.179;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	51173541	rs2256041	A	G	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SOR=1.179;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	51199224	rs2796913	T	C	136.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.38;SOR=1.981;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:165,15,0
+chr6	51274751	.	CTT	C	59.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=1.300;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=0;MQRankSum=-0.937;QD=5.43;ReadPosRankSum=0.550;SOR=0.223;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:51:97,0,51
+chr6	51317602	rs9367432	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=7.26;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51329696	rs3928895	G	C	93.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SOR=2.833;VQSLOD=8.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
+chr6	51339492	rs4090367	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51434479	rs4997737	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51434483	rs181171044	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51446475	rs2495854	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51492046	rs9474033	T	G	2499.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SOR=8.287;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2528,187,0
+chr6	51492164	rs9370040	T	A	258.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SOR=4.174;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
+chr6	51503597	.	C	CAAA	667.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=-1.388;DP=300;FS=6.792;MLEAC=1;MLEAF=0.500;MQ=49.95;MQ0=0;MQRankSum=-2.762;NEGATIVE_TRAIN_SITE;QD=2.23;ReadPosRankSum=-2.418;SOR=0.016;VQSLOD=-2.167e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:77,45:122:99:705,0,1544
+chr6	51512707	rs2580009	T	C	944.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.22;SOR=6.593;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:973,78,0
+chr6	51521787	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51523739	rs115072237	T	C	6637.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=176;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SOR=2.371;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,175:175:99:6666,526,0
+chr6	51551346	rs557398	T	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=0.693;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	51590078	rs1326610	T	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.303;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	51604677	.	C	T	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=-0.058;DP=66;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.341;QD=14.50;ReadPosRankSum=1.938;SOR=0.066;VQSLOD=0.460;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,30:66:99:985,0,1262
+chr6	51606225	rs142928645	C	T	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.380;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.380;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.720;SOR=1.329;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:59:143,0,59
+chr6	51611733	rs200125913	A	C	194.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=1.133;DB;DP=24;FS=9.938;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-0.153;NEGATIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=0.643;SOR=3.990;VQSLOD=-1.655e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,16:24:99:223,0,155
+chr6	51617800	rs1326607	A	G	332.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SOR=4.804;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
+chr6	51634407	.	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51640751	rs3920621	C	G	1527.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.616;ClippingRankSum=-0.475;DB;DP=114;FS=5.314;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-1.120;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.393;SOR=0.217;VQSLOD=1.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1556,0,2311
+chr6	51649062	rs11435548	G	GT	58.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.42;SOR=1.179;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
+chr6	51649079	rs4715232	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.693;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	51652585	rs1326561	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51652595	rs1326562	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51655796	rs6904634	T	C	99.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.303;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:9:127,9,0
+chr6	51655803	rs6924716	C	T	99.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SOR=2.833;VQSLOD=7.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
+chr6	51656236	rs7765455	G	T	1483.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SOR=3.611;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1512,120,0
+chr6	51656388	rs4715233	A	G	93.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SOR=2.833;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
+chr6	51664791	rs1980834	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51664816	rs2148459	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51671321	rs1326584	T	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	51671350	rs4470847	C	G	66.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.09;SOR=1.179;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
+chr6	51673939	rs1326588	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51706167	rs10648630	C	CCCTTT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.90;SOR=0.693;VQSLOD=8.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51712492	rs9370067	A	T	1705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.14;SOR=7.523;VQSLOD=6.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1734,126,0
+chr6	51718857	rs1831015	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51720838	rs9349603	T	C	7371.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=189;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SOR=2.858;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,185:185:99:7400,557,0
+chr6	51720872	rs7452724	A	G	6199.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SOR=3.188;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,161:161:99:6228,484,0
+chr6	51723015	rs9370074	G	A	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=2.303;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	51732598	rs9382043	G	A	2712.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SOR=3.026;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2741,222,0
+chr6	51732628	rs9382044	G	A	3330.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SOR=2.276;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3359,267,0
+chr6	51735261	rs982874	G	T	2752.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SOR=4.558;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2781,220,0
+chr6	51735613	rs2064871	T	C	314.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.95;SOR=4.407;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:343,24,0
+chr6	51747589	rs6458801	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51750563	rs4711985	A	T	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SOR=5.283;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:527,39,0
+chr6	51757014	rs1321516	C	T	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	51768630	rs141063789	CATATAT	C	229.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=10.44;SOR=2.303;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:20:267,20,0
+chr6	51791091	rs4711990	G	T	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	51793425	rs5876244	C	CA	44.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;SOR=0.693;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	51796751	rs3857602	G	A	89.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SOR=1.179;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
+chr6	51798753	rs1266888	G	A	308.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.90;SOR=4.407;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:337,24,0
+chr6	51798760	rs1884953	T	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-0.365;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.365;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-0.365;SOR=0.412;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:123,0,204
+chr6	51799166	rs1266889	T	C	1497.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.26;SOR=4.977;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1526,111,0
+chr6	51800445	rs1266890	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51814216	rs4715264	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51814217	rs1266913	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	51844368	rs2435324	A	G	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=0.693;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	51856374	rs9463746	A	G	45.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.87;SOR=2.303;VQSLOD=8.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	51875250	rs2435322	A	C	4902.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.79;SOR=1.170;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4931,391,0
+chr6	51882075	rs9349614	C	G	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.572;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.589;QD=3.31;ReadPosRankSum=0.572;SOR=0.169	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,201
+chr6	51889483	rs45517932	G	A	1402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=-0.441;DB;DP=91;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.758;QD=15.42;ReadPosRankSum=0.099;SOR=0.684;VQSLOD=3.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1431,0,1559
+chr6	51890823	rs9296669	G	A	908.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=-1.279;DB;DP=60;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.614;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.052;SOR=0.575;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,30:60:99:937,0,937
+chr6	51891011	rs2499480	T	C	1469.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.480;ClippingRankSum=1.669;DB;DP=99;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.671;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.425;SOR=0.787;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,45:99:99:1498,0,1703
+chr6	51913240	rs10948667	G	A	2227.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.872;ClippingRankSum=0.978;DB;DP=133;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.127;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.314;SOR=0.691;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,72:133:99:2256,0,2006
+chr6	51914898	rs9395759	T	C	962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SOR=5.211;VQSLOD=6.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:991,81,0
+chr6	51914956	rs9370096	G	A	738.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;ClippingRankSum=-1.239;DB;DP=57;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=53.16;MQ0=0;MQRankSum=-2.997;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.567;SOR=1.274;VQSLOD=0.740;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,27:57:99:767,0,838
+chr6	51917550	rs1896983	G	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	51923569	rs56342114	CTCTA	C	188.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.74;SOR=3.611;VQSLOD=5.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:16:226,16,0
+chr6	51924774	rs1896976	A	G	11214.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=307;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SOR=0.923;VQSLOD=3.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,306:306:99:11243,918,0
+chr6	51927683	rs13198604	T	C	130.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.736;SOR=0.941;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,5:6:22:159,0,22
+chr6	51930886	rs5876252	T	TA	1123.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.596;DB;DP=98;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=0.066;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.047;SOR=1.571;VQSLOD=5.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,49:63:99:1161,0,109
+chr6	51935061	rs4711996	T	G	632.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SOR=5.670;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:661,48,0
+chr6	51935747	rs17576809	C	T	1555.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;ClippingRankSum=0.579;DB;DP=78;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.207;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=2.282;SOR=1.437;VQSLOD=1.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,44:78:99:1584,0,1003
+chr6	51936846	rs3936986	T	C	1197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.520;ClippingRankSum=2.065;DB;DP=65;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.165;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-0.310;SOR=0.499;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1226,0,894
+chr6	51938242	rs9474140	A	G	2915.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.879;ClippingRankSum=-1.660;DB;DP=204;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=0.616;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.116;SOR=0.846;VQSLOD=2.35;culprit=DP	GT:AD:DP:GQ:PL	0/1:112,92:204:99:2944,0,3367
+chr6	51944847	rs1892274	T	C	1304.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.941;ClippingRankSum=0.488;DB;DP=91;FS=6.922;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.933;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.242;SOR=2.140;VQSLOD=2.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1333,0,1431
+chr6	51946893	rs6458806	T	C	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=8.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	51947237	rs9474143	G	A	5131.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.221;DB;DP=273;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.398;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=1.871;SOR=0.538;VQSLOD=1.29;culprit=DP	GT:AD:DP:GQ:PL	0/1:114,158:272:99:5160,0,3305
+chr6	51949862	rs9370097	A	G	953.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;ClippingRankSum=-1.115;DB;DP=65;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.363;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.917;SOR=0.505;VQSLOD=5.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,29:65:99:982,0,1231
+chr6	51953191	rs6905678	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51963443	rs6914462	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	51971195	rs3997006	T	C	91.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SOR=2.833;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
+chr6	51997155	rs1892278	A	C	327.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SOR=3.056;VQSLOD=5.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:356,27,0
+chr6	52054249	rs7747909	G	A	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.922;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.017;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.000;SOR=0.693;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:134,0,134
+chr6	52061133	rs11962054	A	G	16.63	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.63;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
+chr6	52064989	rs11755816	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52065009	rs11751159	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52073500	rs4464776	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52075816	rs2397079	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.693;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	52085748	rs591274	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52111808	rs761167	C	T	630.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=-0.018;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.792;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.534;SOR=0.743;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:659,0,402
+chr6	52117224	rs604952	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52129484	rs2230240	C	T	3990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=-0.723;DB;DP=236;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.012;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=2.682;SOR=0.712;VQSLOD=1.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:105,131:236:99:4019,0,2992
+chr6	52129667	rs2307326	G	A	917.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.356;ClippingRankSum=-0.312;DB;DP=53;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.791;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=-2.147;SOR=0.808;VQSLOD=3.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,28:53:99:946,0,873
+chr6	52130745	rs6925229	T	C	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=1.898;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.488;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.597;SOR=0.340;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:191,0,354
+chr6	52131254	rs10807441	C	T	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.953;ClippingRankSum=0.770;DB;DP=83;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.223;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.269;SOR=1.534;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1412,0,1442
+chr6	52137313	rs12207056	C	T	464.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.684;ClippingRankSum=-0.306;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.56;MQ0=0;MQRankSum=-0.162;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.207;SOR=1.609;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:493,0,518
+chr6	52138441	rs6918669	G	A	286.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.355;ClippingRankSum=-0.442;DB;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.971;SOR=1.781;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:315,0,267
+chr6	52141670	rs3765446	A	T	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=1.000;DB;DP=12;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.134;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.135;SOR=1.371;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:171,0,247
+chr6	52142092	rs2307325	C	T	222.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.092;DB;DP=24;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.276;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.704;SOR=1.214;VQSLOD=2.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,8:24:99:251,0,540
+chr6	52142582	rs13191372	G	A	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;ClippingRankSum=0.496;DB;DP=31;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=0.695;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=1.409;SOR=0.527;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:453,0,593
+chr6	52143987	rs2076510	C	T	232.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=-0.625;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.241;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.973;SOR=0.593;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:261,0,314
+chr6	52144081	rs2073036	T	C	952.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=-0.724;DB;DP=63;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.193;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.145;SOR=0.485;VQSLOD=2.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,34:63:99:981,0,911
+chr6	52147271	rs7756989	T	C	20.80	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=1.380;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.720;QD=3.47;ReadPosRankSum=0.720;SOR=0.693	GT:AD:DP:GQ:PL	0/1:4,2:6:49:49,0,109
+chr6	52147363	rs12202495	A	G	191.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;ClippingRankSum=0.579;DB;DP=20;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.193;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=1.042;SOR=0.392;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:220,0,424
+chr6	52147692	rs2307322	T	A	893.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.042;ClippingRankSum=0.160;DB;DP=47;FS=9.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.460;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=3.166;SOR=2.472;VQSLOD=0.472;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,25:47:99:922,0,588
+chr6	52148465	rs9474192	T	G	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=8.21;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	52217185	rs9395785	C	G	142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=-0.922;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.495;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.922;SOR=1.609;VQSLOD=5.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:66:171,0,66
+chr6	52240487	rs6458837	G	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	52245945	rs71794438	CA	C	38.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.35;SOR=2.303;VQSLOD=7.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	52257835	rs669893	A	G	17.61	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.61;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
+chr6	52257856	rs526553	G	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	52267967	rs76408349	A	C	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.231;POSITIVE_TRAIN_SITE;QD=7.95;ReadPosRankSum=-0.358;SOR=0.446;VQSLOD=5.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,92
+chr6	52268008	rs3748066	T	G	117.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.198;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-0.922;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-0.922;SOR=0.527;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:62:146,0,62
+chr6	52268086	rs146353145	C	T	319.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=-0.387;DB;DP=21;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-0.810;QD=15.23;ReadPosRankSum=0.599;SOR=1.911;VQSLOD=1.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:348,0,301
+chr6	52268890	rs17591381	G	A	546.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.774;DB;DP=49;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=1.035;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.794;SOR=0.712;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,22:49:99:575,0,819
+chr6	52269199	rs3799272	T	C	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=9.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	52296461	rs1840169	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52319251	rs614570	C	T	274.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.751;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.751;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=0.751;SOR=3.056;VQSLOD=5.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,8:9:10:302,0,10
+chr6	52355206	rs2273120	T	C	1095.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SOR=5.353;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1124,87,0
+chr6	52357260	rs7757370	C	A	601.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.84;SOR=5.670;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:630,48,0
+chr6	52367845	rs3032	C	T	381.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.927;DB;DP=24;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=0.695;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.348;SOR=0.859;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:410,0,338
+chr6	52370939	rs9688915	G	A	1148.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;ClippingRankSum=1.052;DB;DP=64;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.175;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.836;SOR=1.212;VQSLOD=2.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1177,0,853
+chr6	52380641	rs941968	C	T	424.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=-1.102;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.395;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.603;SOR=0.576;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:453,0,559
+chr6	52381728	rs6917085	A	T	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-0.727;SOR=1.609;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:32:115,0,32
+chr6	52425189	rs7744675	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52433894	rs55959984	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52451301	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52453985	rs9370135	T	A	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:30:71,0,30
+chr6	52469904	rs9463802	A	G	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=0.693;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	52475696	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52483058	rs11755043	C	A	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=2.303;VQSLOD=8.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	52538160	rs55704840	A	AG	38.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.35;SOR=0.693;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	52538171	rs7746344	A	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	52538198	rs9349638	T	A	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=0.693;VQSLOD=7.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	52538242	rs9349639	T	G	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=0.693;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	52538390	rs9349640	T	C	45.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.87;SOR=0.693;VQSLOD=8.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	52541811	rs13211066	G	A	2092.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SOR=7.941;VQSLOD=6.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2121,157,0
+chr6	52546789	rs2281484	C	T	1421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SOR=7.328;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1450,114,0
+chr6	52553436	rs9382133	C	T	766.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.060;DB;DP=45;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=0.370;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=0.418;SOR=1.118;VQSLOD=2.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,26:44:99:795,0,532
+chr6	52565427	rs4637643	T	G	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	52568775	rs6909894	G	C	181.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SOR=1.981;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
+chr6	52568848	rs36098646	G	GA	25.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQ0=0;MQRankSum=0.727;QD=6.49;ReadPosRankSum=0.727;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:13:63,0,13
+chr6	52615371	rs199546282	T	G	302.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.160;ClippingRankSum=-0.230;DB;DP=163;FS=296.910;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=0;MQRankSum=-0.947;QD=1.86;ReadPosRankSum=-4.824;SOR=8.189;VQSLOD=-1.995e+02;culprit=FS	GT:AD:DP:GQ:PL	0/1:103,59:162:99:331,0,2945
+chr6	52616633	rs72934249	C	T	667.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.954;ClippingRankSum=0.781;DB;DP=47;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.909;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-0.631;SOR=0.509;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,21:47:99:696,0,789
+chr6	52617731	rs2180314	C	G	6239.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.736;ClippingRankSum=-0.690;DB;DP=405;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.793;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.185;SOR=0.583;VQSLOD=1.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:207,197:404:99:6268,0,6969
+chr6	52622475	rs2608624	G	T	277.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;ClippingRankSum=-0.529;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.529;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-1.482;SOR=0.941;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:306,0,255
+chr6	52622814	rs2254050	C	T	889.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.466;ClippingRankSum=2.068;DB;DP=50;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.456;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=0.651;SOR=0.773;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,26:50:99:918,0,713
+chr6	52630153	rs6458868	C	T	560.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.430;DB;DP=42;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=0;MQRankSum=0.483;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=2.308;SOR=1.064;VQSLOD=2.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:21,20:41:99:589,0,560
+chr6	52630269	rs6458869	C	A	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;ClippingRankSum=-1.139;DB;DP=26;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=0;MQRankSum=-2.083;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=-0.583;SOR=0.346;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,18:26:99:563,0,197
+chr6	52631188	rs2749029	A	G	696.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.581;DB;DP=58;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.722;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.581;SOR=0.416;VQSLOD=2.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,25:58:99:725,0,1078
+chr6	52655827	rs6904269	G	A	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=2.303;VQSLOD=9.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	52657321	rs4147615	T	C	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=9.21;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	52658962	rs1051775	T	C	16388.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=1.724;ClippingRankSum=-0.564;DB;DP=430;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.177;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=0.878;SOR=0.736;VQSLOD=-8.417e-01;culprit=DP	GT:AD:DP:GQ:PL	1/1:1,429:430:99:16417,1283,0
+chr6	52660828	rs2894803	C	A	2866.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SOR=8.608;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2895,220,0
+chr6	52661267	.	ATATATATATATATATATATATGTGTG	A	235.79	PASS	AC=2;AF=1.00;AN=2;DP=21;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=11.23;SOR=3.912;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:19:273,19,0
+chr6	52662263	rs2397106	C	T	1326.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=34.02;SOR=5.892;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1355,114,0
+chr6	52662568	rs139503836	G	A	365.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;ClippingRankSum=-0.198;DB;DP=36;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=-1.778;QD=10.16;ReadPosRankSum=1.120;SOR=0.293;VQSLOD=2.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:394,0,797
+chr6	52663705	rs9349644	C	T	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=0.693;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	52663813	rs10948722	A	G	801.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SOR=6.091;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:830,60,0
+chr6	52664133	.	T	C	1090.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.013;ClippingRankSum=-0.873;DP=57;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.328;QD=19.14;ReadPosRankSum=0.377;SOR=0.285;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1119,0,874
+chr6	52670630	rs10807454	A	C	691.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;SOR=3.258;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:720,48,0
+chr6	52670633	rs62412861	A	G	725.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=24.12;SOR=3.258;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:51:754,51,0
+chr6	52670639	rs62412870	C	T	680.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=29.35;SOR=3.258;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:709,48,0
+chr6	52677230	rs5876288	G	GA	2040.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.166;DB;DP=129;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=0.381;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-0.674;SOR=1.636;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:6,81:87:99:2070,156,0
+chr6	52678337	rs6458873	G	T	1706.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SOR=5.330;VQSLOD=6.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1735,132,0
+chr6	52678463	rs6458874	C	T	360.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SOR=4.804;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
+chr6	52678500	rs6458875	C	G	82.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;SOR=2.833;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
+chr6	52688905	rs2983232	G	T	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.72;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	52694086	rs4311507	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52695461	rs10948726	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52697601	rs55815585	T	G	3617.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SOR=2.354;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3646,277,0
+chr6	52697825	rs4715345	A	C	5351.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SOR=2.226;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,122:122:99:5380,367,0
+chr6	52697834	rs4715346	C	A	5365.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SOR=2.507;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5394,370,0
+chr6	52697890	rs4715347	C	T	2514.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SOR=5.042;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2543,195,0
+chr6	52698035	rs4715348	A	G	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	52698653	rs6458880	C	T	131.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SOR=3.258;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
+chr6	52698788	rs4712021	T	C	3962.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SOR=8.977;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3991,271,0
+chr6	52698798	rs4715349	G	T	4293.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SOR=9.210;VQSLOD=6.95;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4322,298,0
+chr6	52700920	rs2397117	T	C	5074.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SOR=9.735;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,129:129:99:5103,388,0
+chr6	52701143	rs2397118	C	T	12265.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=338;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SOR=1.526;VQSLOD=2.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,337:337:99:12294,1013,0
+chr6	52701458	rs2397119	T	C	81.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SOR=2.833;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
+chr6	52701582	rs62412887	T	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	52701589	rs2397121	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	52702324	rs4715350	T	C	4926.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.30;SOR=3.048;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4955,406,0
+chr6	52702529	rs4715351	T	C	1973.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SOR=7.743;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2002,141,0
+chr6	52712461	rs9296693	G	A	232.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SOR=4.174;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
+chr6	52712645	rs9296694	C	G	4081.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.812;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4110,322,0
+chr6	52713902	rs62412891	C	T	1799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SOR=3.958;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1828,141,0
+chr6	52724654	rs9349647	C	T	94.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SOR=2.833;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
+chr6	52735179	rs72938158	T	A	2626.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;ClippingRankSum=1.186;DB;DP=68;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=3.323;SOR=5.136;VQSLOD=0.542;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:4,64:68:99:2655,186,0
+chr6	52743455	rs4715360	T	C	2478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=8.287;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2507,187,0
+chr6	52744741	rs13198332	G	A	498.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.93;SOR=0.693;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:527,42,0
+chr6	52746642	rs72940404	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:30:40,0,30
+chr6	52761898	rs2295605	T	C	585.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SOR=5.784;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:614,51,0
+chr6	52766192	rs6935603	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52767869	rs542113	T	A	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	52768392	.	CA	C	63.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=-0.832;DP=73;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=1.360;QD=0.87;ReadPosRankSum=-1.466;SOR=0.111;VQSLOD=2.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,11:53:99:101,0,838
+chr6	52785560	rs689167	G	A	446.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SOR=0.836;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:475,39,0
+chr6	52785580	rs689197	G	A	546.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SOR=0.693;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:575,48,0
+chr6	52785649	rs581594	G	A	388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SOR=4.804;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:417,30,0
+chr6	52795274	rs547362	G	T	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=0.693;VQSLOD=8.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	52802244	rs371403	A	G	109.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.26;SOR=1.609;VQSLOD=7.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
+chr6	52820382	rs10948733	G	A	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	52835606	rs571672	T	C	114.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SOR=3.258;VQSLOD=6.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:142,12,0
+chr6	52839185	rs428957	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52843131	rs367836	G	T	2227.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SOR=8.015;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2256,163,0
+chr6	52843477	rs375887	A	G	995.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SOR=5.058;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1024,75,0
+chr6	52843524	rs543613	T	C	344.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SOR=4.615;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
+chr6	52847150	rs67390777	TA	T	38.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=66.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=12.75;SOR=2.833;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
+chr6	52847273	rs3831189	T	TAC	756.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.026;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQ0=0;MQRankSum=-0.078;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.544;SOR=2.621;VQSLOD=6.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,24:30:99:794,0,101
+chr6	52847551	rs316133	G	C	3193.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SOR=2.833;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3222,249,0
+chr6	52847682	rs10557482	GGAGA	G	232.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=3.912;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
+chr6	52849146	rs316128	G	T	959.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SOR=5.136;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,26:26:78:988,78,0
+chr6	52849481	.	C	CT	353.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=-1.730;DP=59;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-0.663;POSITIVE_TRAIN_SITE;QD=6.00;ReadPosRankSum=-1.275;SOR=1.609;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,23:37:99:391,0,172
+chr6	52850040	rs669674	A	G	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	52851936	rs508078	T	C	1473.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SOR=5.031;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1502,114,0
+chr6	52881235	rs11756408	C	T	143.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=-0.198;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.198;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=-0.922;SOR=1.609;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:63:172,0,63
+chr6	52892683	rs222456	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52929010	rs11401639	A	AT	12.93	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.47;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52938468	.	AT	A	1342.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.585;ClippingRankSum=-0.022;DP=99;FS=6.337;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;MQRankSum=-0.412;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.299;SOR=3.952;VQSLOD=1.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1380,141,0
+chr6	52941597	rs34970749	TA	T	32.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.35;SOR=0.693;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
+chr6	52943841	rs35757290	TA	T	559.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SOR=5.670;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:597,48,0
+chr6	52958479	rs2816350	A	G	1666.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SOR=3.816;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1695,132,0
+chr6	52962715	rs2744455	C	T	1715.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.20;SOR=6.184;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1744,132,0
+chr6	52985368	rs6919768	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	52992851	rs377590473	AGAAGG	A	35.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=1.055;DB;DP=21;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-2.362;QD=1.70;ReadPosRankSum=0.280;SOR=0.043;VQSLOD=3.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,3:21:73:73,0,1155
+chr6	52998788	rs2816346	G	A	128.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.258;VQSLOD=7.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
+chr6	52998834	rs2816345	C	T	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=-0.163;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.054;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=1.464;SOR=0.307;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:154,0,317
+chr6	52998856	rs2518573	T	G	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;ClippingRankSum=0.439;DB;DP=25;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=-0.322;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-0.966;SOR=0.412;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:254,0,473
+chr6	53010182	rs9367511	A	G	116.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.927;ClippingRankSum=-0.533;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.212;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.092;SOR=0.368;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:145,0,291
+chr6	53010609	rs59049517	TA	T	57.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.731;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQ0=0;MQRankSum=-0.731;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=0.731;SOR=1.981;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,4:5:14:95,0,14
+chr6	53061391	rs78303998	G	A	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=-0.421;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.922;QD=14.35;ReadPosRankSum=0.421;SOR=0.693;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,121
+chr6	53062469	rs7772870	G	A	98.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SOR=1.179;VQSLOD=7.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
+chr6	53071745	rs77744774	C	T	100.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=-1.271;DB;DP=10;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=41.67;MQ0=0;MQRankSum=-1.733;QD=10.08;ReadPosRankSum=0.000;SOR=4.407;VQSLOD=-7.559e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:10:38:129,0,38
+chr6	53072388	rs62413047	A	C	120.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=-0.365;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.036;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.133;SOR=1.329;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:149,0,125
+chr6	53072441	rs11758224	A	G	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=-1.067;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.572;QD=3.72;ReadPosRankSum=-1.067;SOR=0.693	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,221
+chr6	53072501	rs11756086	T	C	22.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=-1.495;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.198;QD=3.26;ReadPosRankSum=-0.198;SOR=1.802	GT:AD:DP:GQ:PL	0/1:5,2:7:51:51,0,184
+chr6	53103062	rs10583094	TAC	T	36.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.35;SOR=0.693;VQSLOD=8.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	53119938	.	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	53120011	.	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53173704	rs209484	C	T	29.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=9.93;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:25:58,0,25
+chr6	53186203	rs209499	C	T	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=2.303;VQSLOD=8.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	53210951	rs209523	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53229240	rs1346602	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=7.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	53302223	rs11967914	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53306308	rs1401156	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53325093	rs11969450	G	A	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:34:62,0,34
+chr6	53363487	rs10604357	GGGCT	G	931.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.942;DB;DP=65;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-0.356;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.364;SOR=1.141;VQSLOD=6.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,26:63:99:969,0,1920
+chr6	53365019	rs661346	G	C	4389.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SOR=1.262;VQSLOD=6.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4418,375,0
+chr6	53366008	rs12525473	C	T	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.303;VQSLOD=8.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	53366061	rs12525474	C	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=9.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	53370107	rs661603	T	C	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;ClippingRankSum=0.998;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.103;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-0.578;SOR=0.693;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:282,0,260
+chr6	53370327	rs17884019	C	T	446.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=-0.471;DB;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.300;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.848;SOR=1.112;VQSLOD=4.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:475,0,461
+chr6	53372145	rs1555903	T	C	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.717;ClippingRankSum=-1.830;DB;DP=57;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.171;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.024;SOR=0.385;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,23:57:99:789,0,1142
+chr6	53373197	rs2235707	G	C	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=-1.193;DB;DP=25;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.250;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.028;SOR=0.387;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:404,0,860
+chr6	53373198	rs17880319	A	G	375.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;ClippingRankSum=-0.765;DB;DP=27;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.913;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.716;SOR=0.404;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,11:27:99:404,0,860
+chr6	53373276	rs17881410	C	T	1348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.532;ClippingRankSum=-1.183;DB;DP=82;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.107;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.654;SOR=0.742;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1377,0,1369
+chr6	53373624	rs3830795	G	GCTCCAC	706.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=-1.149;DB;DP=50;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=0;MQRankSum=-5.319;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.966;SOR=0.399;VQSLOD=1.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,20:49:99:744,0,1894
+chr6	53378861	rs11385177	A	AT	433.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=-1.535;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.249;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.456;SOR=0.693;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:471,0,469
+chr6	53379193	rs17885705	A	T	3122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=-0.402;DB;DP=206;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.173;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.720;SOR=0.781;VQSLOD=1.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:103,103:206:99:3151,0,3088
+chr6	53379352	rs17881444	A	G	1554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.383;ClippingRankSum=1.328;DB;DP=104;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.133;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=1.368;SOR=0.719;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1583,0,1676
+chr6	53379405	rs3736729	A	C	1019.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.059;DB;DP=50;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.059;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=-1.690;SOR=1.051;VQSLOD=4.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1048,0,693
+chr6	53379499	rs17883806	G	C	182.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-2.383;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.866;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-0.741;SOR=1.085;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:211,0,139
+chr6	53385934	rs17883816	T	C	291.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.766;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.237;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=1.591;SOR=1.112;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:320,0,184
+chr6	53394065	rs17883125	C	T	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	53409451	.	C	CCCT	53.70	PASS	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.43;SOR=2.303;VQSLOD=6.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	53470507	rs9349679	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	53493640	rs6925537	T	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.609;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:83,6,0
+chr6	53493642	rs6903184	G	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=7.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	53516876	rs6928338	T	G	250.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SOR=0.892;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:279,27,0
+chr6	53519062	rs10948758	A	G	5150.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SOR=0.882;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,125:125:99:5179,376,0
+chr6	53519605	rs3799260	C	T	7091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=190;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.12;SOR=0.693;VQSLOD=2.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,190:190:99:7120,571,0
+chr6	53519857	rs12210809	G	A	4207.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.51;SOR=1.220;VQSLOD=5.94;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4236,331,0
+chr6	53520088	rs2038939	T	C	2813.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.28;SOR=3.643;VQSLOD=5.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2842,207,0
+chr6	53520124	rs2038940	A	G	1799.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.97;SOR=6.273;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1828,138,0
+chr6	53528784	rs1326553	A	G	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=8.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	53529027	rs1326554	A	T	3242.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.30;SOR=4.929;VQSLOD=5.98;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3271,262,0
+chr6	53543213	rs4541744	C	T	99.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SOR=1.179;VQSLOD=7.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
+chr6	53559094	rs10452610	A	G	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=2.303;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	53586617	rs35610624	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53601883	rs7745277	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53606394	rs4457161	T	C	12.07	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:23:40,0,23
+chr6	53620789	rs7763482	C	T	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=2.303;VQSLOD=9.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	53626319	.	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53654033	rs3001010	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	53662935	rs9382237	C	T	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	53674284	rs4475321	C	T	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	53676354	rs4715425	G	A	91.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SOR=1.179;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
+chr6	53690779	rs3003489	T	C	46.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.37;SOR=2.303;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr6	53691835	rs7755924	A	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	53694407	rs6904545	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53707098	rs4286781	C	T	4179.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SOR=2.876;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4208,331,0
+chr6	53723062	rs145334901	AT	A	13.89	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.94;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
+chr6	53726761	rs3935663	C	T	47.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=6.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:22:76,0,22
+chr6	53726780	rs3935664	A	G	90.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SOR=1.179;VQSLOD=9.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
+chr6	53749074	rs4265034	G	C	79.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SOR=2.833;VQSLOD=8.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
+chr6	53755300	rs6458972	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53762210	rs62397108	C	A	270.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=-0.033;DB;DP=23;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.824;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.890;SOR=2.165;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:299,0,376
+chr6	53764829	rs71558840	T	G	125.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=1.304;DB;DP=26;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=0;MQRankSum=2.136;QD=4.84;ReadPosRankSum=1.969;SOR=0.387;VQSLOD=1.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,10:25:99:154,0,298
+chr6	53778661	rs201915048	T	G	38.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.938;ClippingRankSum=-0.459;DB;DP=84;FS=136.465;MLEAC=1;MLEAF=0.500;MQ=49.90;MQ0=0;MQRankSum=-5.277;QD=0.46;ReadPosRankSum=-6.784;SOR=6.271;VQSLOD=-4.291e+01;culprit=FS	GT:AD:DP:GQ:PL	0/1:61,22:83:67:67,0,1974
+chr6	53784268	rs59246960	C	CT	332.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.57;SOR=5.549;VQSLOD=4.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:370,45,0
+chr6	53784662	rs3777661	A	G	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.421;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.421;SOR=0.693;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:138,0,134
+chr6	53785276	rs2294789	C	A	178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=-0.365;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.365;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-2.072;SOR=1.085;VQSLOD=5.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:207,0,141
+chr6	53785759	rs201940946	G	GT	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=-0.550;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQ0=0;MQRankSum=-0.550;QD=5.72;ReadPosRankSum=-0.937;SOR=0.941;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:54:83,0,54
+chr6	53787267	rs2294791	G	C	221.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=1.656;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.935;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.101;SOR=0.836;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:250,0,220
+chr6	53805460	rs6907354	A	G	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.303;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	53893735	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53927326	rs4715439	T	C	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=7.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	53953083	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53973251	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	53982990	rs4521576	A	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=2.303;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	53986503	rs2145754	A	T	180.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=1.186;DB;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.466;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=1.932;SOR=0.859;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,162
+chr6	53989526	rs4712056	G	A	2189.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=1.695;DB;DP=131;FS=6.808;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-1.076;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.657;SOR=0.326;VQSLOD=1.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:59,70:129:99:2218,0,1820
+chr6	54003899	rs11965480	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.693;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	54013765	rs2145755	A	G	923.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.107;ClippingRankSum=0.838;DB;DP=48;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.142;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.735;SOR=0.866;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,26:48:99:952,0,728
+chr6	54025155	rs10484648	T	C	760.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;ClippingRankSum=0.655;DB;DP=56;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-0.099;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.458;SOR=1.151;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,23:53:99:789,0,990
+chr6	54030072	rs1280860	T	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=2.303;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	54035531	rs2792626	T	C	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	54046086	rs2792632	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54054686	rs6934690	T	A	2471.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=-2.348;DB;DP=167;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.357;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.550;SOR=0.892;VQSLOD=2.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,88:167:99:2500,0,2110
+chr6	54054837	rs9296739	A	G	811.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;ClippingRankSum=-2.468;DB;DP=45;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.876;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-1.149;SOR=0.829;VQSLOD=5.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,24:45:99:840,0,675
+chr6	54058426	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54067088	rs67016420	AT	A	245.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=-0.810;DB;DP=24;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=62.65;MQ0=0;MQRankSum=1.303;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.880;SOR=0.160;VQSLOD=2.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:283,0,313
+chr6	54095411	rs2275770	C	G	1855.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.478;ClippingRankSum=-0.434;DB;DP=111;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=1.030;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=-1.101;SOR=0.609;VQSLOD=4.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,53:111:99:1884,0,2350
+chr6	54095423	rs816384	T	C	2503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.058;ClippingRankSum=-0.087;DB;DP=130;FS=7.052;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-0.073;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.105;SOR=2.758;VQSLOD=0.745;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,72:130:99:2532,0,2153
+chr6	54095524	rs2275769	C	T	4212.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.148;ClippingRankSum=1.384;DB;DP=307;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-1.330;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.874;SOR=0.887;VQSLOD=1.41;culprit=DP	GT:AD:DP:GQ:PL	0/1:165,138:303:99:4241,0,5117
+chr6	54157748	rs6458990	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54157803	rs149997923	G	GTT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	54157804	rs13211037	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	54159866	rs7775058	C	T	83.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.76;SOR=1.179;VQSLOD=7.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
+chr6	54159915	rs7740868	G	T	64.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.43;SOR=2.833;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
+chr6	54166206	.	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	54166208	.	CA	C	43.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=14.60;SOR=0.223;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:19:81,0,19
+chr6	54173085	rs2297981	T	A	239.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SOR=4.174;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
+chr6	54175705	rs148816365	C	CTTTCTT	143	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SOR=1.609;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
+chr6	54185689	rs2297983	G	T	92.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SOR=2.833;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
+chr6	54186024	rs2297986	T	C	1611.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SOR=5.235;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1640,126,0
+chr6	54186147	rs1058768	T	C	3340.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SOR=0.906;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3369,274,0
+chr6	54191363	rs9370289	G	A	180.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SOR=3.611;VQSLOD=5.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
+chr6	54191970	rs1848440	T	A	4352.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.31;SOR=3.556;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4381,364,0
+chr6	54208353	rs1417387	T	C	185.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SOR=3.912;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
+chr6	54212964	rs1876606	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54349833	rs2294725	G	A	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=0;MQRankSum=0.421;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.368;SOR=0.693;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:124,0,121
+chr6	54350048	rs807991	G	A	997.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.754;ClippingRankSum=0.019;DB;DP=73;FS=12.208;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=1.161;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.551;SOR=0.108;VQSLOD=1.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,38:66:99:1026,0,963
+chr6	54350422	rs565623	G	A	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=-0.634;DB;DP=67;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=0.433;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-1.010;SOR=1.142;VQSLOD=2.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,35:67:99:1085,0,982
+chr6	54356832	rs3900305	T	A	31.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=-1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.358;POSITIVE_TRAIN_SITE;QD=6.35;ReadPosRankSum=0.358;SOR=0.368;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,75
+chr6	54438922	rs10447409	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54467267	rs1951694	A	G	44.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:73,0,32
+chr6	54477874	rs5876389	T	TA	16.80	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.40;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
+chr6	54485844	rs7766941	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54489986	rs10948830	G	A	2797.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=-0.973;DB;DP=129;FS=4.335;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=1.300;NEGATIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=1.119;SOR=0.983;VQSLOD=-1.343e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:54,73:127:99:2826,0,2602
+chr6	54489990	rs10948831	A	G	2774.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=-0.704;DB;DP=125;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=0.479;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.468;SOR=0.927;VQSLOD=0.604;culprit=DP	GT:AD:DP:GQ:PL	0/1:52,71:123:99:2803,0,2545
+chr6	54490041	rs9349726	T	C	2720.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.830;ClippingRankSum=-0.591;DB;DP=155;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=2.054;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=0.525;SOR=0.513;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,82:153:99:2749,0,2148
+chr6	54490338	rs10807475	T	A	832.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;ClippingRankSum=-0.537;DB;DP=81;FS=11.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.204;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.105;SOR=0.051;VQSLOD=0.328;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,38:74:99:870,0,1117
+chr6	54500405	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54557514	rs1395632	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
+chr6	54571089	rs6907631	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54635275	rs2397171	G	C	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=-0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.720;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=0.720;SOR=0.307;VQSLOD=5.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,148
+chr6	54635398	rs5876400	T	TG	256.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=-2.000;DB;DP=14;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=51.87;MQ0=0;MQRankSum=-1.733;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=-1.467;SOR=1.288;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:294,0,145
+chr6	54635417	rs4516942	G	A	237.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;ClippingRankSum=-0.794;DB;DP=20;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-1.172;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.189;SOR=0.693;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:266,0,354
+chr6	54635605	rs73742825	C	G	103.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=17.17;SOR=1.609;VQSLOD=3.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
+chr6	54661634	rs12216186	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	54672835	rs10807480	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54682692	.	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54691959	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54692294	rs72957572	A	G	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=8.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	54734941	rs7765721	C	A	557.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.038;ClippingRankSum=-1.807;DB;DP=46;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.312;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.089;SOR=0.412;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,19:46:99:586,0,962
+chr6	54735122	rs1472679	A	G	2623.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=-0.594;DB;DP=179;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.157;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.205;SOR=0.798;VQSLOD=2.83;culprit=DP	GT:AD:DP:GQ:PL	0/1:91,86:177:99:2652,0,2889
+chr6	54735594	rs995851	G	A	418.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;ClippingRankSum=0.395;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.187;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.686;SOR=0.576;VQSLOD=5.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:447,0,581
+chr6	54735606	rs995852	G	A	893.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SOR=6.358;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:69:922,69,0
+chr6	54792553	.	G	A	1230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.237;ClippingRankSum=1.275;DP=82;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=0;MQRankSum=-1.187;QD=15.01;ReadPosRankSum=-0.624;SOR=1.402;VQSLOD=3.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,48:75:99:1259,0,685
+chr6	54807006	rs171224	T	G	114.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=1.368;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.421;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.421;SOR=0.693;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,127
+chr6	54824610	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54857680	rs2134536	G	A	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.406;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.406;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.988;SOR=0.693;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,3:6:73:74,0,73
+chr6	54936685	rs57552002	T	TAATA	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	54938529	rs4312988	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	54998074	rs9370385	A	G	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=2.303;VQSLOD=8.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	55003132	rs9349759	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55028053	rs200898132	CAACA	C	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=26.85;SOR=2.303;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	55028113	rs6459069	C	T	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=9.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	55040774	rs4615392	A	G	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=0.693;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	55045025	rs9370399	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55113411	rs3122169	C	A	2001.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.942;ClippingRankSum=-1.093;DB;DP=131;FS=4.929;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.196;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-0.937;SOR=1.302;VQSLOD=2.09;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,66:131:99:2030,0,2129
+chr6	55142337	rs2653349	A	G	920.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;ClippingRankSum=-0.235;DB;DP=82;FS=3.142;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.602;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=1.940;SOR=1.110;VQSLOD=2.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,31:78:99:949,0,1545
+chr6	55142458	rs11455646	C	CT	65.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-1.788;DB;DP=22;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=0.244;POSITIVE_TRAIN_SITE;QD=2.99;ReadPosRankSum=-0.380;SOR=0.446;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:103,0,107
+chr6	55190480	rs12110721	G	A	59.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.76;SOR=1.179;VQSLOD=7.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
+chr6	55196299	rs4715531	C	A	87.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SOR=2.833;VQSLOD=9.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
+chr6	55196587	rs12199003	C	T	2169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=1.972;DB;DP=139;FS=4.029;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.737;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=1.585;SOR=0.438;VQSLOD=2.24;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,71:138:99:2198,0,1867
+chr6	55206112	rs7761953	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55215079	rs1032767	G	A	1033.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SOR=5.211;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1062,81,0
+chr6	55215155	rs7743512	C	T	247.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=1.059;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.106;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-1.164;SOR=0.976;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:276,0,215
+chr6	55216005	rs870806	G	A	1207.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.265;ClippingRankSum=0.451;DB;DP=75;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.005;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.589;SOR=0.234;VQSLOD=3.38;culprit=DP	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1236,0,1296
+chr6	55223501	rs41474045	T	G	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=9.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	55223531	rs62419074	A	G	95.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=1.110;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.457;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.457;SOR=0.160;VQSLOD=4.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:99:124,0,384
+chr6	55223962	.	G	GTCTATCTATCTATCTA	839.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=1.806;DP=80;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-1.121;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-2.584;SOR=0.237;VQSLOD=1.23;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,22:52:99:877,0,3184
+chr6	55224107	rs9475257	A	G	80.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.231;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=1.231;SOR=1.022;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:65:109,0,65
+chr6	55227565	rs17830060	T	C	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.303;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	55227593	rs9475263	C	T	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=1.380;POSITIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=-0.720;SOR=1.179;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,110
+chr6	55227683	rs9475264	C	G	70.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=-0.248;DB;DP=9;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.573;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=1.203;SOR=1.911;VQSLOD=1.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:99:99,0,193
+chr6	55227930	rs35444148	CA	C	43.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=14.42;SOR=2.833;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
+chr6	55258643	rs28479599	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55263789	rs9396088	C	T	128.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.258;VQSLOD=7.51;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
+chr6	55263921	rs41271314	T	C	376.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.406;ClippingRankSum=0.798;DB;DP=32;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.044;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.136;SOR=0.078;VQSLOD=2.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,12:32:99:405,0,694
+chr6	55264362	rs6936510	T	C	1182.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SOR=6.736;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1211,84,0
+chr6	55264461	rs6913781	C	T	236.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SOR=4.174;VQSLOD=6.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:265,21,0
+chr6	55266394	rs1546297	T	A	509.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SOR=5.283;VQSLOD=7.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:538,39,0
+chr6	55266625	rs9370418	T	C	5961.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SOR=1.061;VQSLOD=5.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5990,508,0
+chr6	55266722	rs12529201	C	T	2018.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SOR=6.593;VQSLOD=6.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2047,162,0
+chr6	55266796	rs10948913	C	T	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=-0.898;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.480;QD=2.38;ReadPosRankSum=1.271;SOR=0.105	GT:AD:DP:GQ:PL	0/1:8,2:10:52:52,0,252
+chr6	55275656	rs884360	A	C	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.693;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	55294300	rs1393326	T	A	60.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.09;SOR=1.179;VQSLOD=7.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
+chr6	55297178	rs1032766	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55334381	rs9382495	G	A	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	55357373	rs4530860	A	G	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.76;SOR=0.693;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	55358360	rs9475318	A	G	91.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SOR=1.179;VQSLOD=8.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
+chr6	55359142	rs70986720	A	AC	44.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;SOR=0.693;VQSLOD=8.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	55359361	rs62407080	T	A	121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.267;DB;DP=14;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.200;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=1.067;SOR=0.307;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:150,0,312
+chr6	55360086	rs4538708	A	G	530.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SOR=5.283;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:559,39,0
+chr6	55361878	rs9475319	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=9.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	55365910	rs59233169	A	ACT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=7.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	55368931	rs4540264	T	C	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	55378633	rs13206666	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	55381262	rs6459082	G	A	5521.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SOR=4.220;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,145:145:99:5550,436,0
+chr6	55381574	rs9464253	T	G	460.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SOR=5.283;VQSLOD=7.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:489,39,0
+chr6	55381594	rs9464254	T	C	300.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SOR=4.407;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:329,24,0
+chr6	55392955	rs7743010	C	G	87.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.693;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:9:115,9,0
+chr6	55392956	rs7743274	G	A	87.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SOR=1.179;VQSLOD=7.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
+chr6	55406399	rs9367638	C	T	1374.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SOR=7.223;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1403,108,0
+chr6	55425387	rs9367641	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55431875	rs9464265	C	G	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SOR=0.693;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	55471178	rs4583976	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55494744	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55509428	rs4504466	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55519639	rs10807498	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55545792	rs34899952	C	T	572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SOR=5.549;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:601,45,0
+chr6	55625041	rs3798845	G	A	44.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:26:73,0,26
+chr6	55714314	rs62404968	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	55730212	rs2021803	G	A	169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.969;ClippingRankSum=-0.648;DB;DP=22;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.126;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=1.126;SOR=1.179;VQSLOD=2.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,8:22:99:198,0,496
+chr6	55739553	rs3734444	A	G	5242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.927;ClippingRankSum=0.832;DB;DP=341;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=1.703;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.746;SOR=0.848;VQSLOD=1.42;culprit=DP	GT:AD:DP:GQ:PL	0/1:176,162:338:99:5271,0,5457
+chr6	55848128	rs6911711	C	T	57.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.09;SOR=1.179;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
+chr6	55924214	rs3830813	TC	T	169.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.583;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.869;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.779;SOR=0.693;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,206
+chr6	55926067	rs181810990	T	A	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.550;DB;DP=7;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.550;QD=15.11;ReadPosRankSum=-0.937;SOR=2.494;VQSLOD=1.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:92:134,0,92
+chr6	55929347	rs2235735	T	C	2151.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=1.043;DB;DP=139;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=1.492;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=2.796;SOR=0.714;VQSLOD=2.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,75:138:99:2180,0,1872
+chr6	55929582	rs80177427	C	T	195.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DB;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.264;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.996;SOR=0.368;VQSLOD=4.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:224,0,344
+chr6	55932035	rs138548441	A	AT	3804.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=-0.649;DB;DP=235;FS=5.070;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=-0.423;QD=16.19;ReadPosRankSum=-0.407;SOR=1.173;VQSLOD=-7.158e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:134,100:234:99:3842,0,6908
+chr6	55932036	rs62406152	C	T	3813.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.075;ClippingRankSum=1.080;DB;DP=238;FS=5.079;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.382;QD=16.02;ReadPosRankSum=-0.395;SOR=1.179;VQSLOD=-6.900e-02;culprit=DP	GT:AD:DP:GQ:PL	0/1:136,102:238:99:3842,0,6908
+chr6	55932278	rs12209529	C	T	994.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.948;ClippingRankSum=0.169;DB;DP=74;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.664;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.071;SOR=0.463;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,32:74:99:1023,0,1552
+chr6	55932511	rs9396171	A	G	64.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.43;SOR=1.179;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
+chr6	55933942	rs12189567	A	G	1295.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.118;DB;DP=97;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.361;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.265;SOR=0.278;VQSLOD=2.33;culprit=DP	GT:AD:DP:GQ:PL	0/1:53,43:96:99:1324,0,1752
+chr6	55933987	rs12189571	A	C	812.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;ClippingRankSum=-0.455;DB;DP=59;FS=5.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.675;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.539;SOR=2.506;VQSLOD=2.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,25:58:99:841,0,1009
+chr6	55935196	rs17218309	G	A	45.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.87;SOR=2.303;VQSLOD=8.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	55935617	rs41271338	T	C	3245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=-1.316;DB;DP=211;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.833;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-0.759;SOR=0.734;VQSLOD=1.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:104,107:211:99:3274,0,3061
+chr6	55935791	rs1028390	T	C	301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=1.010;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.780;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-0.241;SOR=0.804;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:330,0,267
+chr6	55938839	rs4715576	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=-0.099;DB;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.296;POSITIVE_TRAIN_SITE;QD=5.82;ReadPosRankSum=-0.591;SOR=0.616;VQSLOD=4.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:99:133,0,453
+chr6	55942538	rs969513	G	T	175.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SOR=1.022;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
+chr6	55942643	rs3065899	CAT	C	36.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=63.51;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.736;SOR=2.225;VQSLOD=2.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:41:74,0,41
+chr6	55942956	rs17218770	C	G	1775.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.320;DB;DP=106;FS=6.993;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=1.655;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.003;SOR=0.281;VQSLOD=1.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,56:106:99:1804,0,1640
+chr6	55943073	rs76049205	T	C	470.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.873;ClippingRankSum=1.669;DB;DP=22;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.003;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=1.135;SOR=1.085;VQSLOD=4.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:499,0,281
+chr6	55943101	rs62404861	C	A	242.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.366;ClippingRankSum=-0.340;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.340;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=1.324;SOR=0.818;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:271,0,258
+chr6	55966027	rs12206920	C	G	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=8.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	55966418	rs4379279	A	G	640.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SOR=5.670;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:669,48,0
+chr6	55988619	rs41464152	T	C	84.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.727;SOR=1.609;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:28:113,0,28
+chr6	55988796	rs150586735	TTA	T	665.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=-0.589;DB;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=-1.804;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.285;SOR=0.957;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:703,0,546
+chr6	55988837	.	CT	C	386.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-1.883;DP=57;FS=8.505;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=0;MQRankSum=-0.083;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=0.276;SOR=2.910;VQSLOD=1.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,24:39:99:424,0,248
+chr6	55988932	rs41271844	T	C	1723.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.515;DB;DP=108;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=0.871;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.465;SOR=0.446;VQSLOD=2.59;culprit=DP	GT:AD:DP:GQ:PL	0/1:50,57:107:99:1752,0,1593
+chr6	55989320	rs12210901	T	C	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=-0.406;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.406;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.406;SOR=0.693;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:97:110,0,97
+chr6	55990773	rs146607719	GTTTAC	G	82.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=-0.358;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=-1.231;SOR=1.022;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,131
+chr6	56006672	rs10807510	C	T	2289.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.297;ClippingRankSum=-0.222;DB;DP=137;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.209;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.316;SOR=0.641;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:67,70:137:99:2318,0,1931
+chr6	56021453	rs33997736	CTA	C	44.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;SOR=2.303;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	56021870	rs111577315	T	TAAA	789.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SOR=5.892;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:59:827,59,0
+chr6	56021985	rs1925180	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	56021991	rs1925181	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	56022644	rs9382583	C	T	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=8.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	56023811	rs994667	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56029832	rs10708181	AT	A	131.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=14.64;SOR=3.912;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
+chr6	56031405	rs112307837	C	T	257.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.696;DB;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.393;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.696;SOR=3.258;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,9:10:8:285,0,8
+chr6	56033094	rs35471617	G	A	1337.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=-0.876;DB;DP=117;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=1.143;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.054;SOR=0.910;VQSLOD=2.31;culprit=DP	GT:AD:DP:GQ:PL	0/1:70,47:117:99:1366,0,2112
+chr6	56037700	rs2397204	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56038131	rs9357892	A	C	266.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SOR=1.609;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
+chr6	56038152	rs1925186	C	G	388.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.093;VQSLOD=6.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:30:417,30,0
+chr6	56038178	rs9357893	G	A	104.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.633;DB;DP=11;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=0;MQRankSum=1.447;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.365;SOR=3.258;VQSLOD=1.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:99:133,0,206
+chr6	56038210	rs77593705	G	C	155.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=-1.268;DB;DP=11;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=0.336;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.470;SOR=0.662;VQSLOD=2.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,147
+chr6	56044578	rs2038149	T	C	10645.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=271;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SOR=1.041;VQSLOD=2.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,271:271:99:10674,815,0
+chr6	56045043	rs2038150	C	A	1313.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.79;SOR=7.054;VQSLOD=6.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1342,99,0
+chr6	56045393	rs6933151	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56076639	rs6939465	A	C	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=9.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	56076688	rs6939632	C	T	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=8.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	56078396	rs6908195	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56080842	rs4126555	A	G	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=6.86;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	56090871	rs3846924	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56094789	rs1925147	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56135778	.	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56141614	rs141389271	G	GT	509.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.694;DB;DP=108;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=0.858;QD=4.72;ReadPosRankSum=-0.709;SOR=0.467;VQSLOD=3.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,26:60:99:547,0,668
+chr6	56149855	rs9475651	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	56149857	rs4715605	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	56160179	rs4432980	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56163121	rs9396195	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56184256	rs4593354	T	C	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=8.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	56231275	rs60251615	GT	G	22.73	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0
+chr6	56241523	rs6915564	T	G	134.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SOR=3.258;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
+chr6	56271872	rs10456188	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56289250	rs623582	G	A	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=7.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	56357668	rs376190394	CA	C	95.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=-0.049;DB;DP=93;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=1.135;QD=1.03;ReadPosRankSum=-0.148;SOR=0.156;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:52,15:67:99:133,0,976
+chr6	56365814	rs4283892	A	G	5670.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SOR=2.647;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5699,507,0
+chr6	56371698	rs9296848	A	G	6846.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.83;SOR=7.452;VQSLOD=5.12;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,168:168:99:6875,506,0
+chr6	56373536	rs41271862	C	T	2810.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.287;ClippingRankSum=-0.385;DB;DP=179;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.394;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=1.719;SOR=0.556;VQSLOD=2.22;culprit=DP	GT:AD:DP:GQ:PL	0/1:86,93:179:99:2839,0,2900
+chr6	56374754	rs9296849	C	A	3283.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SOR=6.689;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3312,259,0
+chr6	56380064	rs5876514	CAT	C	739.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SOR=5.892;VQSLOD=6.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:18:54:777,54,0
+chr6	56381912	rs4715626	G	A	9981.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;ClippingRankSum=-1.538;DB;DP=273;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.409;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=1.474;SOR=2.272;VQSLOD=-5.700e-03;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,267:268:99:10010,795,0
+chr6	56394173	rs9357922	T	C	2768.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SOR=8.526;VQSLOD=7.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2797,210,0
+chr6	56395051	rs6939305	C	A	2021.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SOR=7.941;VQSLOD=7.06;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2050,157,0
+chr6	56396694	rs34224935	CT	C	39.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.85;SOR=0.693;VQSLOD=7.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	56399731	rs7758054	A	T	964.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.50;SOR=6.518;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,25:25:75:993,75,0
+chr6	56401999	rs4472350	G	A	91.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SOR=2.833;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
+chr6	56403072	.	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
+chr6	56410533	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56417282	rs4715630	C	T	12421.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=331;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SOR=1.081;VQSLOD=3.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,331:331:99:12450,995,0
+chr6	56417545	rs4715631	T	C	10049.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=259;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SOR=1.059;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,259:259:99:10078,779,0
+chr6	56425284	rs2067543	A	G	1201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751;ClippingRankSum=0.059;DB;DP=57;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.652;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.296;SOR=0.220;VQSLOD=2.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,38:57:99:1230,0,587
+chr6	56425497	rs200368513	C	A	36.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.37;SOR=2.303;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
+chr6	56425900	rs1884284	G	A	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=8.93;ReadPosRankSum=-0.736;SOR=1.179	GT:AD:DP:GQ:PL	0/1:1,2:3:35:55,0,35
+chr6	56425921	rs1884285	T	A	80.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.684;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.517;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.684;SOR=1.179;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:118,0,116
+chr6	56425971	rs1884286	A	G	590.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;ClippingRankSum=-0.814;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.374;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=-0.330;SOR=1.536;VQSLOD=5.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,20:30:99:619,0,310
+chr6	56426562	rs9357923	G	A	403.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=-0.527;DB;DP=23;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.837;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-0.155;SOR=0.963;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,13:23:99:432,0,331
+chr6	56426931	rs9367689	C	T	2689.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;ClippingRankSum=0.043;DB;DP=192;FS=4.778;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.486;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=2.114;SOR=0.409;VQSLOD=2.13;culprit=DP	GT:AD:DP:GQ:PL	0/1:95,96:191:99:2718,0,3023
+chr6	56427095	rs79573569	C	CTGAGTGTTGAAA	1073.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.523;DB;DP=57;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=0;MQRankSum=-4.897;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=-1.568;SOR=0.483;VQSLOD=0.980;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,25:57:99:1111,0,1888
+chr6	56437465	rs1014309	T	C	1445.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.090;ClippingRankSum=0.209;DB;DP=89;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=1.085;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=1.427;SOR=0.648;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1474,0,1510
+chr6	56437902	rs2144405	C	T	1056.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.383;ClippingRankSum=0.809;DB;DP=66;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.951;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=-1.516;SOR=0.461;VQSLOD=2.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1085,0,1085
+chr6	56453346	rs6919941	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56458332	.	T	A	301.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.441;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=0;MQRankSum=-3.737;QD=10.78;ReadPosRankSum=-1.927;SOR=0.460;VQSLOD=-8.078e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:330,0,2663
+chr6	56458334	.	G	A	282.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.476;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-3.134;QD=8.84;ReadPosRankSum=-0.992;SOR=0.260;VQSLOD=0.189;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,11:32:99:311,0,3242
+chr6	56458337	.	G	A	260.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=-0.083;DP=38;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=-3.199;QD=6.86;ReadPosRankSum=-0.878;SOR=0.134;VQSLOD=-4.171e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,10:38:99:289,0,3630
+chr6	56458338	.	T	A	215.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=4.133;ClippingRankSum=-0.659;DP=39;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=-3.522;NEGATIVE_TRAIN_SITE;QD=5.53;ReadPosRankSum=-2.300;SOR=0.126;VQSLOD=-2.429e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,10:39:99:244,0,3725
+chr6	56458339	.	AGGCT	A	206.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=-1.136;DP=43;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQ0=0;MQRankSum=-3.349;QD=4.81;ReadPosRankSum=-3.027;SOR=0.100;VQSLOD=-5.999e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,10:43:99:244,0,3725
+chr6	56462840	rs9370541	G	A	2994.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-1.553;DB;DP=213;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=0.686;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.540;SOR=1.216;VQSLOD=2.10;culprit=DP	GT:AD:DP:GQ:PL	0/1:118,95:213:99:3023,0,3656
+chr6	56463410	rs4712138	T	C	5519.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.361;ClippingRankSum=-0.682;DB;DP=398;FS=13.317;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.637;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=2.315;SOR=0.352;VQSLOD=-4.795e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:208,189:397:99:5548,0,6660
+chr6	56466999	rs9382653	T	G	75.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=0.358;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=1.231;SOR=1.022;VQSLOD=6.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:63:104,0,63
+chr6	56467586	rs11751914	G	A	530.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043;ClippingRankSum=1.304;DB;DP=35;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.403;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.601;SOR=0.641;VQSLOD=5.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:559,0,665
+chr6	56468238	rs9370543	G	A	3348.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.795;ClippingRankSum=0.055;DB;DP=200;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.619;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=2.983;SOR=0.871;VQSLOD=2.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:102,97:199:99:3377,0,3183
+chr6	56468537	rs9382656	T	C	5633.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.003;ClippingRankSum=-2.016;DB;DP=287;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.379;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-1.151;SOR=0.827;VQSLOD=0.525;culprit=DP	GT:AD:DP:GQ:PL	0/1:124,162:286:99:5662,0,3728
+chr6	56470551	rs13194995	T	A	4264.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=-0.154;DB;DP=311;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.365;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.256;SOR=0.662;VQSLOD=1.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:169,141:310:99:4293,0,5525
+chr6	56470690	rs13209548	G	A	4581.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.043;DB;DP=298;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-1.592;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.757;SOR=0.668;VQSLOD=1.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:151,147:298:99:4610,0,4504
+chr6	56471402	rs9382658	G	A	5089.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.422;DB;DP=342;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.581;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.721;SOR=0.676;VQSLOD=1.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:182,158:340:99:5118,0,6087
+chr6	56471995	rs16888055	C	T	2905.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.315;ClippingRankSum=0.444;DB;DP=194;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.379;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=1.462;SOR=1.052;VQSLOD=2.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:97,95:192:99:2934,0,3313
+chr6	56476023	rs9370544	G	A	43.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=6.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:27:72,0,27
+chr6	56476182	rs10643818	T	TAAGTA	257.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;ClippingRankSum=0.790;DB;DP=31;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=0;MQRankSum=-1.828;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=-0.384;SOR=0.132;VQSLOD=5.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:295,0,1187
+chr6	56476262	rs7747060	T	C	1532.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;ClippingRankSum=-0.045;DB;DP=116;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.777;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.453;SOR=0.898;VQSLOD=2.87;culprit=DP	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1561,0,2190
+chr6	56476456	rs9396226	T	A	997.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.345;DB;DP=87;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.224;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.466;SOR=0.980;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,44:78:99:1035,0,1041
+chr6	56482704	rs9396228	A	C	747.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.823;ClippingRankSum=-0.173;DB;DP=72;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.209;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=2.168;SOR=0.735;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,24:72:99:776,0,1600
+chr6	56482801	rs6459166	C	G	2911.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.679;DB;DP=217;FS=5.006;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=0.577;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.457;SOR=1.052;VQSLOD=2.17;culprit=DP	GT:AD:DP:GQ:PL	0/1:119,98:217:99:2940,0,3555
+chr6	56484758	rs2230862	C	T	1769.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.905;ClippingRankSum=1.335;DB;DP=147;FS=6.412;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=1.822;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.721;SOR=0.357;VQSLOD=1.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:86,61:147:99:1798,0,2992
+chr6	56496649	rs10456737	A	C	1638.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=-1.291;DB;DP=80;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.160;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.671;SOR=0.763;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,51:80:99:1667,0,816
+chr6	56507135	rs1024195	T	C	1136.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.677;ClippingRankSum=0.952;DB;DP=56;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.207;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-0.108;SOR=1.511;VQSLOD=2.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1165,0,749
+chr6	56701620	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56736574	.	TA	T	49.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.817;ClippingRankSum=1.184;DP=26;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=0.531;QD=1.91;ReadPosRankSum=1.312;SOR=0.602;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:87:87,0,131
+chr6	56818706	rs986245	T	C	816.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SOR=2.925;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,24:24:72:845,72,0
+chr6	56827628	rs9349841	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56846334	rs9396247	A	G	342.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SOR=4.615;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:371,27,0
+chr6	56873069	rs6925819	T	C	1050.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SOR=3.912;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1079,90,0
+chr6	56893978	rs58747062	TC	T	28.71	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.35;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
+chr6	56894940	rs34180205	CG	C	106	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.20;SOR=3.258;VQSLOD=5.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
+chr6	56900699	rs3996934	C	T	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	56917538	rs6926980	G	A	2244.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.357;ClippingRankSum=0.056;DB;DP=147;FS=7.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.138;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=2.288;SOR=0.714;VQSLOD=2.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:74,73:147:99:2273,0,2345
+chr6	56919443	rs61740375	A	G	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=-0.128;DB;DP=52;FS=10.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.769;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.044;SOR=0.065;VQSLOD=1.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,25:52:99:781,0,941
+chr6	56963708	rs9367711	T	G	789.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;ClippingRankSum=-0.682;DB;DP=55;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.513;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.295;SOR=0.729;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,28:55:99:818,0,939
+chr6	56994594	rs7758913	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	56998023	rs3757296	A	G	2007.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=-0.822;DB;DP=133;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-0.518;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.605;SOR=0.503;VQSLOD=2.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:64,67:131:99:2036,0,2080
+chr6	57006391	rs2273919	C	T	310.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=-0.380;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=1.356;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=2.007;SOR=1.244;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:339,0,197
+chr6	57006933	rs2273921	T	C	1686.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=0.791;DB;DP=136;FS=8.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.554;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.949;SOR=1.463;VQSLOD=2.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:76,60:136:99:1715,0,2402
+chr6	57012930	rs3734738	C	T	2118.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.567;ClippingRankSum=-0.086;DB;DP=161;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.460;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.077;SOR=0.558;VQSLOD=2.37;culprit=DP	GT:AD:DP:GQ:PL	0/1:87,74:161:99:2147,0,2812
+chr6	57048458	rs9885757	C	T	476.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.695;ClippingRankSum=-0.057;DB;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=0.057;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.019;SOR=0.693;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:505,0,556
+chr6	57055354	rs1040461	C	T	2987.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=-2.243;DB;DP=178;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.750;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.605;SOR=0.855;VQSLOD=2.11;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,97:178:99:3016,0,2448
+chr6	57059820	rs9357940	T	G	252.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.627;DB;DP=14;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.739;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=0.715;SOR=0.976;VQSLOD=6.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,8:14:99:281,0,187
+chr6	57074911	rs9357941	G	A	404.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;ClippingRankSum=-0.103;DB;DP=26;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.462;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-1.538;SOR=0.693;VQSLOD=5.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:433,0,497
+chr6	57097549	rs223304	T	C	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.303;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57106426	rs223289	T	G	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;SOR=2.303;VQSLOD=8.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	57163494	rs7770252	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57182297	rs1019210	C	T	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	57183869	.	A	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
+chr6	57188889	rs79594432	A	T	460.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.415;DB;DP=27;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.756;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-0.512;SOR=0.922;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:489,0,381
+chr6	57191021	rs11381745	A	AG	1131.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SOR=7.054;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1169,99,0
+chr6	57209749	rs9475860	C	T	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SOR=2.303;VQSLOD=6.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	57209802	rs1024706	T	C	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SOR=1.179;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	57209865	rs5876534	GA	G	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57209889	rs1024705	G	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.52;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57213782	rs7772897	A	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57213785	rs7755104	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57226182	rs17705499	C	T	51.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=6.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:29:80,0,29
+chr6	57228571	rs12193422	G	A	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:29:77,0,29
+chr6	57228598	rs6911124	A	G	51.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=12.95;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:23:80,0,23
+chr6	57228685	rs6911177	A	G	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;ClippingRankSum=-0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.720;QD=20.63;ReadPosRankSum=-0.720;SOR=0.693;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:99:152,0,126
+chr6	57228704	rs6934266	T	G	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.358;QD=9.35;ReadPosRankSum=0.358;SOR=0.368;VQSLOD=4.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,154
+chr6	57228809	rs6911507	A	C	50.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=16.92;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
+chr6	57231331	rs2079934	G	T	32.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:61,0,32
+chr6	57231352	rs2397239	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57231354	rs2397240	A	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57232345	rs12200857	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:28:40,0,28
+chr6	57232902	rs62417969	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57234078	rs9464454	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57243144	rs12201524	G	A	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.026;QD=12.44;ReadPosRankSum=0.000;SOR=0.105;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,154
+chr6	57243154	rs12201527	G	A	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=12.44;ReadPosRankSum=0.000;SOR=0.105;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,154
+chr6	57244492	rs7759919	T	C	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=-1.067;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.572;QD=3.10;ReadPosRankSum=-1.067;SOR=0.169	GT:AD:DP:GQ:PL	0/1:6,2:8:53:53,0,209
+chr6	57244509	rs5011405	T	G	34.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=1.589;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.067;POSITIVE_TRAIN_SITE;QD=4.35;ReadPosRankSum=-0.572;SOR=0.169;VQSLOD=5.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,213
+chr6	57244672	rs5011404	G	A	2178.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.306;ClippingRankSum=2.205;DB;DP=136;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-0.847;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.446;SOR=1.017;VQSLOD=2.92;culprit=DP	GT:AD:DP:GQ:PL	0/1:66,70:136:99:2207,0,2213
+chr6	57244780	rs5011403	G	A	3287.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.408;DB;DP=235;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.808;QD=13.99;ReadPosRankSum=0.963;SOR=0.634;VQSLOD=0.424;culprit=FS	GT:AD:DP:GQ:PL	0/1:123,112:235:99:3316,0,3653
+chr6	57244830	rs5011402	T	A	2187.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.318;ClippingRankSum=1.365;DB;DP=134;FS=4.341;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-1.290;QD=16.33;ReadPosRankSum=0.292;SOR=0.162;VQSLOD=0.141;culprit=DP	GT:AD:DP:GQ:PL	0/1:64,70:134:99:2216,0,2120
+chr6	57244893	rs5011401	T	C	609.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.502;ClippingRankSum=-0.431;DB;DP=34;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.260;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=2.018;SOR=0.811;VQSLOD=4.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,18:34:99:638,0,509
+chr6	57244979	rs5011400	G	A	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=-1.231;QD=18.35;ReadPosRankSum=0.358;SOR=1.022;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,137
+chr6	57244982	rs5011399	C	T	91.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=-0.358;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=-1.231;QD=18.35;ReadPosRankSum=0.358;SOR=1.022;VQSLOD=4.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,137
+chr6	57246581	rs62415468	T	A	183.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=-0.742;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-0.742;QD=26.26;ReadPosRankSum=-0.742;SOR=2.584;VQSLOD=3.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,6:7:17:212,0,17
+chr6	57246614	rs62415469	T	C	379.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=-2.285;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.718;QD=25.32;ReadPosRankSum=-1.371;SOR=1.911;VQSLOD=3.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:408,0,118
+chr6	57246638	rs6913328	C	T	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=-1.226;DB;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.603;QD=20.90;ReadPosRankSum=1.654;SOR=1.284;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:697,0,376
+chr6	57246708	rs6913779	G	T	1443.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.155;ClippingRankSum=0.128;DB;DP=141;FS=4.590;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-1.089;QD=10.24;ReadPosRankSum=-0.829;SOR=0.067;VQSLOD=-7.831e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:92,49:141:99:1472,0,3506
+chr6	57246773	rs113849959	T	TAGG	4992.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.124;DB;DP=309;FS=5.829;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-3.483;NEGATIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=1.260;SOR=1.145;VQSLOD=-2.405e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:174,127:301:99:5030,0,7083
+chr6	57246785	rs62415470	A	C	5492.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=8.898;ClippingRankSum=-0.346;DB;DP=349;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=-1.730;QD=15.74;ReadPosRankSum=1.758;SOR=0.781;VQSLOD=-7.042e-01;culprit=DP	GT:AD:DP:GQ:PL	0/1:201,148:349:99:5521,0,7683
+chr6	57246815	rs6936571	T	C	5593.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=6.746;ClippingRankSum=-1.594;DB;DP=416;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-1.167;NEGATIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.267;SOR=0.707;VQSLOD=-1.509e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:229,187:416:99:5622,0,7181
+chr6	57246878	rs61753604	T	C	1938.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=1.162;DB;DP=444;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-1.757;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=4.37;ReadPosRankSum=0.012;SOR=0.802;VQSLOD=-1.920e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:350,94:444:99:1967,0,13279
+chr6	57246884	rs6913546	A	G	7065.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;ClippingRankSum=-0.389;DB;DP=440;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-2.305;NEGATIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-1.094;SOR=0.630;VQSLOD=-2.286e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:227,212:439:99:7094,0,7015
+chr6	57246969	rs4256440	G	A	4783.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.872;ClippingRankSum=0.620;DB;DP=347;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=-0.808;QD=13.79;ReadPosRankSum=-0.427;SOR=0.712;VQSLOD=-4.860e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:182,163:345:99:4812,0,6048
+chr6	57246982	rs4585567	G	T	4000.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.751;ClippingRankSum=0.330;DB;DP=315;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-0.546;QD=12.70;ReadPosRankSum=-0.935;SOR=0.712;VQSLOD=-5.530e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:174,139:313:99:4029,0,5824
+chr6	57247022	rs4382263	C	T	3135.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.094;ClippingRankSum=-0.825;DB;DP=206;FS=9.797;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=0.277;QD=15.22;ReadPosRankSum=0.532;SOR=1.811;VQSLOD=-7.670e-02;culprit=FS	GT:AD:DP:GQ:PL	0/1:108,98:206:99:3164,0,3645
+chr6	57247093	rs4499918	A	T	892.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;ClippingRankSum=0.186;DB;DP=63;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=0.131;QD=14.17;ReadPosRankSum=-0.517;SOR=0.551;VQSLOD=2.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,29:63:99:921,0,1186
+chr6	57247108	rs4507595	G	A	668.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.298;DB;DP=53;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-0.262;QD=12.62;ReadPosRankSum=0.406;SOR=0.416;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:697,0,1110
+chr6	57247121	rs4310040	T	C	577.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.370;ClippingRankSum=-1.834;DB;DP=43;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=-0.849;QD=13.44;ReadPosRankSum=-0.382;SOR=0.428;VQSLOD=3.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,18:43:99:606,0,856
+chr6	57259789	rs149275162	C	A	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57259808	rs117189504	A	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57259820	rs114240725	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57260463	rs9475913	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57262992	rs2894847	A	G	11.83	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
+chr6	57263008	rs72871660	G	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=2.303;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57284914	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57296209	rs78775831	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=9.30;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57296216	rs80242777	C	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=9.30;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57296249	rs72873542	C	G	16.63	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=8.31;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
+chr6	57303056	rs62401712	T	C	40.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=13.59;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=4.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:29:69,0,29
+chr6	57303102	rs62401713	A	G	15.43	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=5.14;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:1:41,0,1
+chr6	57307716	rs60930046	T	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=2.303;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	57307784	rs60600423	C	G	73.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.43;SOR=1.179;VQSLOD=5.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
+chr6	57309839	rs5003056	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57310132	rs73750278	C	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57310138	rs73750279	C	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57310284	rs9464491	A	G	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=0.693;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	57310326	rs73750281	T	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57310334	rs73750282	T	C	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57315082	rs12204748	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=0.693;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57325633	rs4715697	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57326248	rs2145339	A	G	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SOR=0.693;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	57326568	rs9464502	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57330320	rs9382742	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=9.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	57336157	rs9476010	G	A	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.380;QD=5.13;ReadPosRankSum=0.000;SOR=0.693;VQSLOD=3.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,154
+chr6	57336243	rs9476012	G	A	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.026;QD=9.94;ReadPosRankSum=0.000;SOR=0.105;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,78
+chr6	57336279	rs9476013	C	G	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=12.44;ReadPosRankSum=0.000;SOR=0.105;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
+chr6	57336284	rs9476014	A	G	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.026;SOR=0.105;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
+chr6	57336340	rs1570072	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57342040	rs13219968	T	C	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SOR=1.179;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	57345089	rs5024768	G	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=0.693;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	57347208	.	T	TG	21.73	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.87;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
+chr6	57347800	rs34877937	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57347818	rs35142105	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57348150	rs34523439	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57348155	rs35239416	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57348440	rs34411188	A	G	50.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=16.92;ReadPosRankSum=-0.736;SOR=2.225;VQSLOD=1.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:79,0,28
+chr6	57348501	rs35975405	T	C	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SOR=0.693;VQSLOD=5.34;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	57348518	rs71221642	A	G	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SOR=0.693;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	57348534	rs34153534	G	A	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.69;SOR=1.179;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	57348538	rs34509185	T	G	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.33;SOR=1.179;VQSLOD=6.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	57349040	rs9476023	T	C	93.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SOR=1.179;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
+chr6	57349257	rs9476024	C	T	16.63	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.63;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
+chr6	57349280	rs12198778	A	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SOR=2.303;VQSLOD=7.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	57349405	rs9476025	A	G	17.61	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.61;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
+chr6	57349426	rs9476026	C	T	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57349572	rs6929331	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57349576	rs4715714	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=9.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57350134	rs9367752	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57353249	rs4715715	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57355968	rs35947597	T	A	102.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=1.179;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
+chr6	57355975	.	C	A	102.28	PASS	AC=2;AF=1.00;AN=2;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=1.179;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
+chr6	57355995	rs36115431	G	A	102.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=1.179;VQSLOD=6.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
+chr6	57356611	rs9476033	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57358196	rs36181256	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57358870	rs4991170	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57358888	rs5876577	T	TC	37.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.85;SOR=0.693;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr6	57362013	rs62399733	T	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:31:40,0,31
+chr6	57362029	rs73752496	A	G	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:74:81,0,74
+chr6	57362030	rs72877164	C	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:74:81,0,74
+chr6	57362057	rs12526351	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:36:40,0,36
+chr6	57364996	rs73755520	C	T	32.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=0.000;SOR=0.105;VQSLOD=3.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,76
+chr6	57365151	rs5025370	T	C	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=15.92;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:35:76,0,35
+chr6	57366534	rs4715718	G	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57366536	rs4715719	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57368219	rs62400883	G	A	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=12.26;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:30:65,0,30
+chr6	57369510	rs62400894	A	G	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=0.693;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	57371913	rs59066164	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57371916	rs75944038	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57371926	rs10949092	A	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57371931	rs74978393	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57371939	rs10949093	G	A	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=26.87;SOR=0.693;VQSLOD=7.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	57371962	rs10949094	T	A	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=24.37;SOR=0.693;VQSLOD=6.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	57372104	rs2024986	T	C	162.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.514;DB;DP=25;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.091;QD=6.51;ReadPosRankSum=0.212;SOR=0.033;VQSLOD=0.457;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:25:99:191,0,669
+chr6	57372116	rs9382768	T	C	752.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.589;DB;DP=29;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.589;QD=25.96;ReadPosRankSum=-0.778;SOR=1.688;VQSLOD=2.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,20:29:99:781,0,276
+chr6	57372126	rs9396314	C	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=-1.868;DB;DP=35;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.510;POSITIVE_TRAIN_SITE;QD=7.25;ReadPosRankSum=0.698;SOR=0.129;VQSLOD=4.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,9:35:99:282,0,1018
+chr6	57372199	rs9382769	T	C	3132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.094;ClippingRankSum=0.441;DB;DP=131;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.586;QD=23.91;ReadPosRankSum=-0.007;SOR=1.470;VQSLOD=1.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,85:131:99:3161,0,1398
+chr6	57372361	rs9382770	C	A	10336.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.385;ClippingRankSum=-0.913;DB;DP=437;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=1.326;NEGATIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.567;SOR=0.720;VQSLOD=-2.151e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:149,287:436:99:10365,0,4146
+chr6	57372365	rs9396315	A	G	3727.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=-0.329;DB;DP=443;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=3.315;NEGATIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=0.164;SOR=0.610;VQSLOD=-3.453e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:298,144:442:99:3756,0,10951
+chr6	57372374	rs68090917	CT	C	3672.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.028;DB;DP=420;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=0.217;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.275;SOR=0.674;VQSLOD=-1.464e-01;culprit=DP	GT:AD:DP:GQ:PL	0/1:274,132:406:99:3710,0,8968
+chr6	57372436	rs9382771	G	C	4364.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=4.675;ClippingRankSum=0.150;DB;DP=201;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-2.890;NEGATIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.305;SOR=1.373;VQSLOD=-1.610e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:74,127:201:99:4393,0,2326
+chr6	57372437	rs79221898	C	T	2323.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.294;ClippingRankSum=-0.543;DB;DP=202;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=0.030;QD=11.50;ReadPosRankSum=0.294;SOR=0.345;VQSLOD=0.165;culprit=FS	GT:AD:DP:GQ:PL	0/1:123,79:202:99:2352,0,4259
+chr6	57372456	rs35141035	AT	A	952.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.386;DB;DP=149;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=-1.225;POSITIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=0.325;SOR=0.544;VQSLOD=3.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:65,50:115:99:990,0,1228
+chr6	57372480	rs79601039	A	G	1090.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=-0.042;DB;DP=82;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=0.276;QD=13.30;ReadPosRankSum=1.108;SOR=0.482;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,36:82:99:1119,0,1889
+chr6	57372502	rs9349872	G	A	894.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;ClippingRankSum=-0.640;DB;DP=44;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=0;MQRankSum=-3.815;QD=20.34;ReadPosRankSum=-0.166;SOR=0.990;VQSLOD=0.816;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,25:44:99:923,0,664
+chr6	57372510	rs77697887	T	G	453.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=0.318;DB;DP=38;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-3.102;QD=11.94;ReadPosRankSum=-1.226;SOR=0.307;VQSLOD=0.504;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,14:38:99:482,0,966
+chr6	57372514	rs77868044	T	C	425.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.126;ClippingRankSum=0.397;DB;DP=32;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=0;MQRankSum=-1.547;QD=13.31;ReadPosRankSum=-1.389;SOR=0.260;VQSLOD=2.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,11:32:99:454,0,927
+chr6	57372523	rs10706124	TG	T	235.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.381;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.16;MQ0=0;MQRankSum=-3.433;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=1.704;SOR=0.169;VQSLOD=2.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,8:28:99:273,0,858
+chr6	57372526	rs10635932	C	CTTTA	238.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=1.472;DB;DP=26;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.24;MQ0=0;MQRankSum=-3.139;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=1.694;SOR=0.202;VQSLOD=2.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,8:26:99:276,0,816
+chr6	57372583	rs9367754	C	T	93.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=-0.937;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-0.937;QD=13.40;ReadPosRankSum=0.000;SOR=0.941;VQSLOD=4.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:99:122,0,108
+chr6	57372611	rs9382772	C	T	32.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.026;QD=8.19;ReadPosRankSum=0.000;SOR=0.693;VQSLOD=3.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,77
+chr6	57374364	rs75332238	C	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
+chr6	57379671	rs4573085	C	G	43.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=10.95;ReadPosRankSum=0.727;SOR=0.916;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:24:72,0,24
+chr6	57379715	rs2894901	T	G	98.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.51;SOR=1.609;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:126,12,0
+chr6	57379745	rs9476056	G	A	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=28.87;SOR=0.693;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57384745	rs75634578	T	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=0.693;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	57385801	rs4715735	A	G	39.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.87;SOR=0.693;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
+chr6	57386904	rs149764231	GAGA	G	43.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.736;SOR=2.225;VQSLOD=2.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57389299	rs375498702	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57390094	rs12203268	T	C	12.06	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:25:40,0,25
+chr6	57390107	rs200901455	CATCTGTT	C	40.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-1.026;QD=10.18;ReadPosRankSum=0.000;SOR=0.693;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,78
+chr6	57390124	rs56102916	G	C	111.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=27.76;SOR=0.693;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
+chr6	57390134	rs75555855	C	T	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-1.026;QD=6.69;ReadPosRankSum=1.026;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:55:55,0,78
+chr6	57390168	rs78919924	C	T	29.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=9.93;ReadPosRankSum=0.804;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:27:58,0,27
+chr6	57392874	rs927195	C	T	110.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.720;QD=18.46;ReadPosRankSum=0.000;SOR=0.368;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:61:139,0,61
+chr6	57392913	rs927194	T	C	103.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=-1.638;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=1.368;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.922;SOR=0.693;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:132,0,222
+chr6	57392921	rs62398963	T	A	88.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=-1.157;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-0.231;QD=6.83;ReadPosRankSum=-0.386;SOR=0.223;VQSLOD=3.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:99:117,0,346
+chr6	57392963	rs927193	T	C	531.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=-0.110;DB;DP=29;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=0.680;QD=18.34;ReadPosRankSum=-0.811;SOR=0.906;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:560,0,435
+chr6	57393029	rs77090024	T	A	813.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;ClippingRankSum=0.061;DB;DP=76;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-4.889;NEGATIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=2.576;SOR=0.201;VQSLOD=-3.073e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,24:76:99:842,0,2229
+chr6	57393034	rs75127850	G	T	1008.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.248;ClippingRankSum=0.023;DB;DP=86;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.50;MQ0=0;MQRankSum=-5.580;NEGATIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.286;SOR=0.216;VQSLOD=-3.258e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,28:86:99:1037,0,2424
+chr6	57393040	rs74756458	A	T	1158.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=-1.753;DB;DP=96;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=0;MQRankSum=-5.165;NEGATIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=1.667;SOR=0.229;VQSLOD=-3.001e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,32:96:99:1187,0,2672
+chr6	57393054	rs75725892	G	A	1341.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=8.421;ClippingRankSum=0.555;DB;DP=120;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=0;MQRankSum=-4.298;NEGATIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=1.283;SOR=1.179;VQSLOD=-2.209e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:81,39:120:99:1370,0,3620
+chr6	57393074	rs73752376	A	G	1772.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=7.296;ClippingRankSum=0.236;DB;DP=171;FS=3.973;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-2.664;NEGATIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.650;SOR=1.329;VQSLOD=-1.602e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:121,50:171:99:1801,0,5032
+chr6	57393092	rs73752377	T	A	2197.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.412;DB;DP=234;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-2.781;NEGATIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.722;SOR=0.915;VQSLOD=-1.964e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:164,70:234:99:2226,0,6218
+chr6	57393125	rs927192	A	G	7635.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=5.292;ClippingRankSum=-0.772;DB;DP=356;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=0.055;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=-0.840;SOR=0.430;VQSLOD=-2.175e-01;culprit=DP	GT:AD:DP:GQ:PL	0/1:129,227:356:99:7664,0,3693
+chr6	57393160	rs76686926	G	A	2805.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;ClippingRankSum=0.139;DB;DP=395;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-1.496;NEGATIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=0.029;SOR=0.592;VQSLOD=-2.787e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:278,117:395:99:2834,0,8784
+chr6	57393199	rs2397502	C	A	3769.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.119;ClippingRankSum=1.716;DB;DP=344;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=2.244;NEGATIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.093;SOR=0.606;VQSLOD=-1.342e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:226,118:344:99:3798,0,8416
+chr6	57393216	rs2397503	G	T	6455.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.047;ClippingRankSum=0.677;DB;DP=273;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=-1.274;NEGATIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.802;SOR=0.672;VQSLOD=-1.677e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:112,161:273:99:6484,0,4010
+chr6	57393222	rs111989160	A	G	2124.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=6.075;ClippingRankSum=0.447;DB;DP=254;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-0.081;NEGATIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=1.798;SOR=0.705;VQSLOD=-1.470e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:191,63:254:99:2153,0,7932
+chr6	57393228	rs112156516	G	A	2056.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=7.272;ClippingRankSum=-0.141;DB;DP=242;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=0.518;NEGATIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=2.889;SOR=1.002;VQSLOD=-1.477e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:182,60:242:99:2085,0,7456
+chr6	57393278	rs75909609	T	C	978.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.163;ClippingRankSum=1.948;DB;DP=126;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=0.294;QD=7.77;ReadPosRankSum=0.566;SOR=0.428;VQSLOD=1.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:93,33:126:99:1007,0,3194
+chr6	57393323	rs12198995	T	C	122.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;ClippingRankSum=-0.894;DB;DP=63;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=0;MQRankSum=-1.012;QD=1.95;ReadPosRankSum=0.953;SOR=0.033;VQSLOD=0.768;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,9:63:99:151,0,2049
+chr6	57393329	rs76564922	G	T	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=-0.148;DB;DP=58;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.67;MQ0=0;MQRankSum=1.018;QD=8.48;ReadPosRankSum=0.478;SOR=0.145;VQSLOD=3.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,16:58:99:520,0,1666
+chr6	57393337	rs200714656	T	TA	779.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.247;DB;DP=47;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-1.517;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.957;SOR=0.446;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:817,0,1052
+chr6	57393338	rs2397504	T	A	1418.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.401;ClippingRankSum=0.911;DB;DP=45;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-1.809;NEGATIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=-1.578;SOR=2.059;VQSLOD=-2.208e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,33:45:99:1447,0,396
+chr6	57393350	rs2397505	G	A	577.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;ClippingRankSum=-0.510;DB;DP=37;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=0;MQRankSum=-2.800;QD=15.62;ReadPosRankSum=-1.686;SOR=0.395;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,15:37:99:606,0,861
+chr6	57393407	rs374979361	C	T	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=-0.573;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.248;QD=7.53;ReadPosRankSum=-0.248;SOR=0.283;VQSLOD=4.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:96:96,0,194
+chr6	57393519	rs62398965	A	G	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=0.693;VQSLOD=7.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57393716	rs2397508	G	A	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SOR=2.303;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	57394939	rs11963080	C	T	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57395058	rs12202626	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=2.303;VQSLOD=7.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	57395077	rs12195527	C	G	61.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SOR=2.303;VQSLOD=7.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
+chr6	57395396	rs74519885	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57396165	rs6924765	G	A	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:78:81,0,78
+chr6	57396173	rs79246915	G	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=17.59;ReadPosRankSum=-0.736;SOR=0.223;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:78:81,0,78
+chr6	57397866	rs57276498	T	TA	68.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=-0.720;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.720;SOR=1.329;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:38:106,0,38
+chr6	57397944	rs7770986	A	G	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=-0.183;DB;DP=34;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=0.183;QD=5.93;ReadPosRankSum=-0.386;SOR=0.392;VQSLOD=2.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,8:34:99:230,0,866
+chr6	57397982	rs7771127	C	A	876.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;ClippingRankSum=-0.215;DB;DP=57;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=-1.269;QD=15.38;ReadPosRankSum=0.567;SOR=0.197;VQSLOD=1.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,28:57:99:905,0,992
+chr6	57398008	rs7771257	C	T	1863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.114;ClippingRankSum=-0.432;DB;DP=91;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=-1.126;QD=20.48;ReadPosRankSum=-0.093;SOR=0.232;VQSLOD=3.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1892,0,1700
+chr6	57398009	rs7771114	A	G	1863.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.944;ClippingRankSum=0.703;DB;DP=92;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.26;MQ0=0;MQRankSum=-3.030;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-0.203;SOR=0.241;VQSLOD=3.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1892,0,1700
+chr6	57398028	rs67286646	TG	T	832.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.912;DB;DP=148;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=0.437;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=-0.426;SOR=0.853;VQSLOD=3.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:107,40:147:99:870,0,4153
+chr6	57398047	rs76081480	A	C	1782.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=7.353;ClippingRankSum=-0.762;DB;DP=191;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-2.177;NEGATIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-1.084;SOR=0.701;VQSLOD=-1.736e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:127,63:190:99:1811,0,4583
+chr6	57398058	rs7771283	C	G	1588.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.421;ClippingRankSum=0.238;DB;DP=230;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=1.141;NEGATIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=-1.687;SOR=0.435;VQSLOD=-2.531e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:168,61:229:99:1617,0,5971
+chr6	57398081	rs7753294	T	G	5599.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=8.745;ClippingRankSum=0.077;DB;DP=263;FS=27.103;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=-4.145;NEGATIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=2.243;SOR=3.663;VQSLOD=-1.976e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:103,159:262:99:5628,0,3075
+chr6	57398117	rs139574925	T	TA	2948.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=1.493;DB;DP=361;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=0;MQRankSum=-1.420;NEGATIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=-1.614;SOR=0.901;VQSLOD=-2.236e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:262,99:361:99:2986,0,10807
+chr6	57398118	rs147643173	G	T	2951.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.611;ClippingRankSum=0.472;DB;DP=366;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-1.610;NEGATIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=-1.741;SOR=0.841;VQSLOD=-2.741e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:265,101:366:99:2980,0,10921
+chr6	57398154	rs80081867	T	C	9900.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-1.351;DB;DP=417;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=0;MQRankSum=-5.322;NEGATIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=0.785;SOR=1.039;VQSLOD=-2.613e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:170,247:417:99:9929,0,6569
+chr6	57398157	rs9476080	A	G	10031.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=11.939;ClippingRankSum=-0.670;DB;DP=420;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=-6.161;NEGATIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=1.335;SOR=1.089;VQSLOD=-2.877e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:174,246:420:99:10060,0,6871
+chr6	57398163	rs9476081	A	G	9691.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.386;ClippingRankSum=-0.317;DB;DP=428;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=52.95;MQ0=0;MQRankSum=-7.057;NEGATIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=2.150;SOR=1.207;VQSLOD=-3.250e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:182,246:428:99:9720,0,6877
+chr6	57398186	rs147954160	G	GA	3146.73	VQSRTrancheINDEL99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.081;DB;DP=466;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-5.529;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=-0.584;SOR=0.648;VQSLOD=-3.838e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:331,119:450:99:3184,0,13464
+chr6	57398201	rs62398997	T	C	9311.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.323;DB;DP=477;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-2.722;NEGATIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.869;SOR=0.576;VQSLOD=-2.548e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:235,242:477:99:9340,0,8506
+chr6	57398207	rs71214816	G	T	3201.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.739;ClippingRankSum=0.609;DB;DP=476;FS=3.961;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=-5.623;NEGATIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=0.211;SOR=0.475;VQSLOD=-3.396e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:358,113:471:99:3230,0,14267
+chr6	57398226	rs77436138	T	G	5638.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=6.880;ClippingRankSum=1.585;DB;DP=474;FS=4.176;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=-0.678;NEGATIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.594;SOR=0.924;VQSLOD=-2.787e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:202,185:387:99:5667,0,7682
+chr6	57398264	rs62398998	A	G	10505.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=7.800;ClippingRankSum=0.363;DB;DP=483;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-3.599;NEGATIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=1.128;SOR=0.919;VQSLOD=-2.719e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:185,297:482:99:10534,0,5426
+chr6	57398270	rs62398999	C	T	3777.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.082;ClippingRankSum=1.817;DB;DP=482;FS=4.566;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=0;MQRankSum=-2.615;NEGATIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.627;SOR=1.059;VQSLOD=-3.182e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:338,143:481:99:3806,0,12584
+chr6	57398335	rs4715745	A	T	7297.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=-0.623;DB;DP=391;FS=18.280;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=-1.096;NEGATIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.479;SOR=1.573;VQSLOD=-1.998e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:151,240:391:99:7326,0,4341
+chr6	57398385	rs11455120	A	AT	2033.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.004;ClippingRankSum=-0.159;DB;DP=270;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=1.708;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=2.608;SOR=1.265;VQSLOD=-3.154e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:165,71:236:99:2071,0,7214
+chr6	57398395	rs78658694	A	T	1426.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=5.633;ClippingRankSum=-0.557;DB;DP=246;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-1.385;NEGATIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=2.107;SOR=1.287;VQSLOD=-2.484e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:170,67:237:99:1455,0,7359
+chr6	57398412	rs6937166	A	G	1614.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=5.113;ClippingRankSum=0.840;DB;DP=201;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=0.045;NEGATIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.110;SOR=0.142;VQSLOD=-1.257e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:145,56:201:99:1643,0,5481
+chr6	57398491	rs6937368	C	T	90.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;ClippingRankSum=0.170;DB;DP=40;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.019;QD=2.27;ReadPosRankSum=-0.511;SOR=0.039;VQSLOD=1.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,6:40:99:119,0,1359
+chr6	57398503	rs4388290	A	G	387.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.279;ClippingRankSum=-0.151;DB;DP=36;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-0.319;QD=10.77;ReadPosRankSum=-0.319;SOR=0.239;VQSLOD=2.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,12:36:99:416,0,1055
+chr6	57398517	rs4400219	C	A	314.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.503;ClippingRankSum=0.370;DB;DP=31;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-0.196;QD=10.15;ReadPosRankSum=0.849;SOR=0.173;VQSLOD=3.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,9:31:99:343,0,999
+chr6	57398587	rs4506046	A	G	226.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=-0.831;DB;DP=12;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.977;QD=18.90;ReadPosRankSum=1.977;SOR=1.022;VQSLOD=3.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,7:12:99:255,0,157
+chr6	57398921	.	T	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:36:40,0,36
+chr6	57398943	rs12203062	C	T	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=7.44;ReadPosRankSum=-1.026;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:58:58,0,78
+chr6	57404528	rs12528027	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57404529	rs71221626	G	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57404548	rs6934525	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57404559	rs6911998	G	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57409216	rs487488	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57409238	rs7757807	T	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57409250	rs28431347	T	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57409360	rs7775846	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=7.26;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57414331	rs522176	A	G	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57414352	rs522107	G	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57414355	rs577952	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57419091	rs11362490	AG	A	32.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=16.35;SOR=2.303;VQSLOD=8.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
+chr6	57419145	rs482977	T	C	101.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.26;SOR=0.693;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
+chr6	57419169	rs482916	C	T	96.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.09;SOR=1.179;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
+chr6	57419203	rs28444227	T	A	84.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.09;SOR=1.179;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
+chr6	57419529	rs5011343	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57419548	rs5011342	G	A	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.24;SOR=1.609;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:70,6,0
+chr6	57419564	rs5011341	G	A	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57419593	rs5000703	G	T	60.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SOR=1.179;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
+chr6	57419621	rs5000702	C	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SOR=0.693;VQSLOD=7.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	57420055	rs973971	A	T	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.87;SOR=0.693;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	57420085	rs10678736	T	TGCAATA	43.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.736;SOR=2.225;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57420331	rs536921	A	G	45.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.44;ReadPosRankSum=1.026;SOR=0.105;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:33:74,0,33
+chr6	57420394	rs3903673	C	G	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.358;QD=7.95;ReadPosRankSum=1.231;SOR=1.609;VQSLOD=2.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,116
+chr6	57429628	rs9476125	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57429632	rs13200513	C	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57429655	rs13200414	A	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57429863	rs12194179	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57430291	rs12209094	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57430302	rs12195853	G	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=5.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57430787	rs9382792	A	G	66.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SOR=1.179;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
+chr6	57430868	rs9396334	C	T	14.68	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.68;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
+chr6	57431267	rs2397534	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57436741	rs6924004	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57437720	rs519735	A	G	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.87;SOR=0.693;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	57437853	rs13212334	A	G	12.06	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:25:40,0,25
+chr6	57438133	rs1174361	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57438139	rs1174362	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57438156	rs78245671	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57440169	rs581096	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57440174	rs581102	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57440196	rs581193	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57440211	rs581228	T	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=9.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57442438	rs5005193	C	G	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;SOR=2.303;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	57442463	rs5005192	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57442488	rs4715782	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57442506	rs5005191	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57442507	rs5005190	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=6.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57443228	rs6913239	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57443255	rs1855414	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57447972	rs4715787	T	G	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SOR=2.303;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	57454558	rs9357983	C	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57454567	rs62399084	A	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57454589	rs9357984	A	G	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57454920	rs9357986	C	T	55.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.43;SOR=1.179;VQSLOD=5.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
+chr6	57455443	rs7766809	A	G	98.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.76;SOR=1.179;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
+chr6	57456136	rs4596481	T	C	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.86;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	57456931	rs79510351	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57456963	rs75987787	T	C	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.05;SOR=1.179;VQSLOD=6.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	57456968	rs78473260	G	A	107.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SOR=1.179;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
+chr6	57457564	rs3805802	A	G	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=0.693;VQSLOD=8.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57461356	rs62399146	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57463643	rs6905367	A	G	45.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SOR=2.303;VQSLOD=7.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
+chr6	57466787	rs6924157	G	C	81.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=-1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.358;QD=16.35;ReadPosRankSum=0.358;SOR=0.223;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:59:110,0,59
+chr6	57466812	rs78692044	T	A	28.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-0.720;QD=4.80;ReadPosRankSum=-0.720;SOR=1.179	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,146
+chr6	57466836	rs11411187	A	AC	203.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=1.589;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=0.572;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-1.067;SOR=0.693;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:8:57:241,0,57
+chr6	57466844	rs12197381	G	A	64.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=-0.573;DB;DP=9;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=0.248;QD=7.20;ReadPosRankSum=0.248;SOR=0.045;VQSLOD=0.706;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,212
+chr6	57466871	rs79082382	G	A	111.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0.244;DB;DP=12;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-2.141;QD=9.31;ReadPosRankSum=-0.529;SOR=0.446;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:140,0,269
+chr6	57466891	rs12210717	A	T	431.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=-0.698;DB;DP=21;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-0.611;QD=20.56;ReadPosRankSum=0.349;SOR=0.941;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,15:20:99:460,0,165
+chr6	57466915	rs12205876	T	A	732.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=1.449;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=0.839;QD=26.17;ReadPosRankSum=1.297;SOR=0.402;VQSLOD=2.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,20:28:99:761,0,252
+chr6	57466922	rs2894917	T	C	1572.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.29;SOR=4.921;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1601,111,0
+chr6	57466957	rs9885746	C	T	515.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;ClippingRankSum=-0.774;DB;DP=69;FS=3.021;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-0.787;QD=7.47;ReadPosRankSum=-0.192;SOR=0.154;VQSLOD=-3.023e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,20:69:99:544,0,2169
+chr6	57466958	rs12212128	A	G	1712.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.064;DB;DP=74;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-1.391;QD=23.15;ReadPosRankSum=-0.906;SOR=0.355;VQSLOD=2.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,50:74:99:1741,0,776
+chr6	57466969	rs12212129	A	G	1088.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.620;ClippingRankSum=-0.340;DB;DP=83;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-0.237;QD=13.12;ReadPosRankSum=-0.386;SOR=0.362;VQSLOD=3.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,33:83:99:1117,0,1689
+chr6	57466987	rs12205887	T	C	1230.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.854;ClippingRankSum=-0.004;DB;DP=98;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=0.575;QD=12.56;ReadPosRankSum=-0.126;SOR=0.389;VQSLOD=3.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,40:98:99:1259,0,2007
+chr6	57467084	rs9885913	A	G	2211.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=4.628;ClippingRankSum=0.293;DB;DP=304;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.944;NEGATIVE_TRAIN_SITE;QD=7.28;ReadPosRankSum=3.057;SOR=1.014;VQSLOD=-2.572e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:233,71:304:99:2240,0,9850
+chr6	57467093	rs9885916	A	G	2301.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=7.069;ClippingRankSum=0.184;DB;DP=312;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-1.638;NEGATIVE_TRAIN_SITE;QD=7.38;ReadPosRankSum=0.912;SOR=0.918;VQSLOD=-2.342e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:239,73:312:99:2330,0,10451
+chr6	57467100	rs4535533	G	C	6947.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=-2.135;DB;DP=314;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-0.670;NEGATIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=0.520;SOR=0.800;VQSLOD=-1.704e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:122,192:314:99:6976,0,3683
+chr6	57467107	rs9885751	C	T	1881.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=6.859;ClippingRankSum=-1.729;DB;DP=314;FS=5.484;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=-1.808;NEGATIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=0.287;SOR=1.037;VQSLOD=-2.380e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:238,76:314:99:1910,0,9279
+chr6	57467175	rs4406234	A	G	2889.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.932;ClippingRankSum=-0.383;DB;DP=258;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=0.153;NEGATIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=4.087;SOR=0.741;VQSLOD=-7.350e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:159,99:258:99:2918,0,5132
+chr6	57467279	rs6459263	T	C	1140.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=5.633;ClippingRankSum=1.776;DB;DP=140;FS=4.536;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.542;NEGATIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=-0.103;SOR=0.269;VQSLOD=-1.496e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:104,36:140:99:1169,0,4245
+chr6	57467282	rs6459264	T	C	1140.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.755;ClippingRankSum=1.153;DB;DP=134;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=1.020;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-0.325;SOR=0.374;VQSLOD=1.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:100,34:134:99:1169,0,4245
+chr6	57467303	rs1022846	A	G	3478.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.14;SOR=5.330;VQSLOD=6.74;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3507,271,0
+chr6	57467317	rs4637646	G	T	1210.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;ClippingRankSum=-0.892;DB;DP=73;FS=4.921;MLEAC=1;MLEAF=0.500;MQ=56.76;MQ0=0;MQRankSum=0.260;QD=16.59;ReadPosRankSum=0.593;SOR=0.140;VQSLOD=0.741;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,33:73:99:1239,0,1596
+chr6	57467323	rs4424069	G	C	1161.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;ClippingRankSum=-0.170;DB;DP=67;FS=4.828;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-0.107;QD=17.34;ReadPosRankSum=0.648;SOR=0.150;VQSLOD=0.857;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,31:67:99:1190,0,1431
+chr6	57467456	rs4358625	T	G	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=14.59;ReadPosRankSum=0.736;SOR=2.225;VQSLOD=1.27;culprit=DP	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
+chr6	57472201	rs9885694	A	G	75.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=-0.248;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.573;QD=8.42;ReadPosRankSum=1.683;SOR=0.283;VQSLOD=3.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:99:104,0,207
+chr6	57472212	rs9296899	T	A	251.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=1.531;DB;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.377;QD=22.89;ReadPosRankSum=0.382;SOR=1.802;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,8:11:88:280,0,88
+chr6	57472255	rs9296900	C	T	533.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=-1.484;DB;DP=20;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=-0.786;SOR=2.093;VQSLOD=5.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,15:20:99:562,0,141
+chr6	57472299	rs9396358	A	G	360.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.622;ClippingRankSum=0.811;DB;DP=34;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.811;QD=10.61;ReadPosRankSum=-1.460;SOR=0.874;VQSLOD=2.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:389,0,704
+chr6	57472315	rs9296901	A	G	1165.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=-0.988;DB;DP=43;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.663;QD=27.11;ReadPosRankSum=-1.151;SOR=0.271;VQSLOD=-5.021e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,31:43:99:1194,0,341
+chr6	57472316	rs9382818	G	A	458.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;ClippingRankSum=-0.012;DB;DP=43;FS=2.578;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-0.360;QD=10.67;ReadPosRankSum=-1.950;SOR=0.156;VQSLOD=0.405;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,17:43:99:487,0,974
+chr6	57472344	rs111230027	A	AT	305.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.230;DB;DP=64;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=1.887;POSITIVE_TRAIN_SITE;QD=4.78;ReadPosRankSum=-0.919;SOR=0.495;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,17:60:99:343,0,1062
+chr6	57472476	rs9382819	T	C	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.397;ClippingRankSum=1.197;DB;DP=44;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-0.718;QD=7.84;ReadPosRankSum=-1.021;SOR=1.226;VQSLOD=1.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,14:44:99:373,0,1080
+chr6	57472488	rs9382820	C	T	419.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;ClippingRankSum=0.268;DB;DP=43;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.395;QD=9.76;ReadPosRankSum=-1.949;SOR=0.836;VQSLOD=2.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,15:43:99:448,0,1080
+chr6	57472495	rs62400219	C	G	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.265;ClippingRankSum=-0.448;DB;DP=38;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.215;QD=6.94;ReadPosRankSum=-0.050;SOR=0.481;VQSLOD=2.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,10:38:99:292,0,1144
+chr6	57472533	rs9367767	T	C	332.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=-1.122;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-0.830;QD=19.57;ReadPosRankSum=0.049;SOR=0.330;VQSLOD=4.65;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:361,0,224
+chr6	57472534	rs74369127	T	C	46.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.441;DB;DP=17;FS=7.533;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=0.189;NEGATIVE_TRAIN_SITE;QD=2.75;ReadPosRankSum=-1.449;SOR=0.010;VQSLOD=-1.589e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:75:75,0,661
+chr6	57474882	rs62400254	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=6.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57474896	rs62400255	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57476586	rs58187447	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57476608	rs57642151	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57479216	rs4530864	T	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=0.693;VQSLOD=7.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57482492	rs12197718	T	C	39.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.87;SOR=2.303;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
+chr6	57483749	rs9476179	C	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
+chr6	57485342	rs9885648	T	C	10.20	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.804;DB;DP=2;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.804;QD=5.10;ReadPosRankSum=0.804;SOR=0.693	GT:AD:DP:GQ:PL	0/1:1,1:2:35:38,0,35
+chr6	57485391	rs1853495	T	G	15.65	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr6	57490861	rs11963269	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57490866	rs9885704	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57491118	rs9885817	T	C	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=15.92;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:76,0,32
+chr6	57492741	rs79386390	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57492762	rs3805807	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57492776	rs77611141	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57493700	rs62404095	T	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.23;SOR=1.609;VQSLOD=6.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:86,6,0
+chr6	57493709	rs62404096	A	G	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SOR=2.303;VQSLOD=6.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	57493836	rs62404099	C	A	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=2.303;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	57495024	rs5003525	A	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=0.693;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57495215	rs6939623	T	G	13.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.72;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
+chr6	57495238	rs62404102	T	C	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=25.87;SOR=0.693;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	57497543	rs6929435	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57497562	rs76224813	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57497579	rs73755610	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57498301	rs11754853	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57498324	rs11759488	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57498894	rs3846934	G	A	268.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.059;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-0.884;QD=17.92;ReadPosRankSum=-0.177;SOR=1.112;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:297,0,200
+chr6	57498944	rs3846935	G	C	516.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=-0.826;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.064;QD=17.23;ReadPosRankSum=0.233;SOR=0.784;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,18:30:99:545,0,370
+chr6	57499042	rs5876654	A	AT	87.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=-0.570;DB;DP=25;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.219;POSITIVE_TRAIN_SITE;QD=3.51;ReadPosRankSum=-2.324;SOR=0.770;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,6:19:99:125,0,294
+chr6	57499171	rs3846936	T	C	122.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=-0.731;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=24.56;ReadPosRankSum=-0.731;SOR=1.981;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,4:5:25:151,0,25
+chr6	57499188	rs2151627	C	T	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=13.26;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:28:68,0,28
+chr6	57499196	rs11423601	C	CA	24.75	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQ0=0;MQRankSum=0.736;QD=8.25;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:27:62,0,27
+chr6	57499926	rs2397610	A	G	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
+chr6	57500073	rs62404596	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=2.303;VQSLOD=6.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57500104	rs62404597	G	A	64.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=21.43;SOR=1.179;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
+chr6	57500169	rs6926645	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57500181	rs76287706	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57500197	rs11329134	GA	G	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57500204	rs78362714	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57500220	rs4537145	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57500442	rs4540266	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57503123	rs2397930	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57503159	rs3857631	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57503199	rs3996830	T	G	35.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.026;SOR=2.303;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,64
+chr6	57503231	rs78058710	A	G	140.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=29.11;SOR=1.609;VQSLOD=4.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
+chr6	57503398	rs4995671	C	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=0.693;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57503441	rs4995670	T	A	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=23.69;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:33:123,0,33
+chr6	57503444	rs11343070	AC	A	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:33:123,0,33
+chr6	57507333	rs148428624	C	T	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SOR=2.303;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	57507431	rs139113051	T	C	11.83	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.83;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
+chr6	57507846	rs80010809	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57509520	rs62402976	C	T	41.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SOR=0.693;VQSLOD=6.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
+chr6	57511438	rs5011992	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.25;SOR=0.693;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57511528	rs10592385	AATAAC	A	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57511564	rs5011994	G	A	50.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=25.37;SOR=0.693;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	57511607	rs77590924	C	T	14.68	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=14.68;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
+chr6	57511894	rs56224263	T	TAC	34.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.35;SOR=2.303;VQSLOD=8.87;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
+chr6	57512108	rs6914896	G	A	40.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.026;SOR=0.693;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,71
+chr6	57512340	rs4364484	C	T	502.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=-0.142;DB;DP=25;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.217;QD=20.11;ReadPosRankSum=-0.311;SOR=1.358;VQSLOD=3.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:25:99:531,0,284
+chr6	57512352	rs5001077	A	T	198.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.512;DB;DP=30;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.415;QD=6.63;ReadPosRankSum=-0.122;SOR=0.155;VQSLOD=2.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,8:29:99:227,0,724
+chr6	57512439	rs4294006	T	C	1438.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=3.959;ClippingRankSum=0.864;DB;DP=144;FS=7.438;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-1.071;QD=9.99;ReadPosRankSum=0.578;SOR=0.083;VQSLOD=-7.791e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:95,49:144:99:1467,0,3234
+chr6	57512476	rs4307164	G	A	5505.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.662;ClippingRankSum=2.077;DB;DP=241;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=1.460;NEGATIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=-2.015;SOR=0.914;VQSLOD=-1.923e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:78,163:241:99:5534,0,2266
+chr6	57512510	rs4294007	T	G	13853.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=334;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SOR=4.194;VQSLOD=3.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,334:334:99:13882,1010,0
+chr6	57512529	rs5001076	C	A	3081.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.175;ClippingRankSum=-2.050;DB;DP=368;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-0.390;NEGATIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=0.294;SOR=0.968;VQSLOD=-2.195e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:255,113:368:99:3110,0,8577
+chr6	57512565	rs4294008	T	C	9494.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=5.814;ClippingRankSum=0.828;DB;DP=416;FS=5.007;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=2.938;NEGATIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-0.668;SOR=1.299;VQSLOD=-2.221e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:138,278:416:99:9523,0,3960
+chr6	57512678	rs4398719	G	A	11124.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.517;DB;DP=458;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=3.775;NEGATIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=-0.757;SOR=1.082;VQSLOD=-2.409e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:129,325:454:99:11153,0,3458
+chr6	57512711	rs5001484	G	C	5059.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=6.115;ClippingRankSum=-0.961;DB;DP=421;FS=6.509;MLEAC=1;MLEAF=0.500;MQ=53.04;MQ0=0;MQRankSum=1.438;NEGATIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.324;SOR=1.225;VQSLOD=-1.980e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:267,138:405:99:5035,0,6158
+chr6	57512718	rs5001483	T	A	4671.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.336;DB;DP=406;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=0;MQRankSum=0.364;NEGATIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.365;SOR=1.044;VQSLOD=-1.109e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:274,131:405:99:4700,0,11219
+chr6	57512740	.	CTGTTTT	C	1777.73	VQSRTrancheINDEL99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.035;DP=356;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=49.57;MQ0=0;MQRankSum=-7.250;NEGATIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=-0.198;SOR=0.328;VQSLOD=-3.212e+00;culprit=DP	GT:AD:DP:GQ:PL	0/1:286,64:350:99:1815,0,11798
+chr6	57512775	rs7773110	T	G	5490.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.254;ClippingRankSum=-0.905;DB;DP=233;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=0;MQRankSum=-4.463;NEGATIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=-3.464;SOR=1.179;VQSLOD=-2.396e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:92,138:230:99:5519,0,3342
+chr6	57512779	rs76296076	G	T	5369.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880;ClippingRankSum=-0.404;DB;DP=218;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.59;MQ0=0;MQRankSum=-5.088;NEGATIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=-3.913;SOR=1.132;VQSLOD=-2.613e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:89,129:218:99:5398,0,3366
+chr6	57512787	.	T	TCACCAAGGC	4709.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=4.158;ClippingRankSum=1.208;DP=186;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=0;MQRankSum=-6.907;QD=25.32;ReadPosRankSum=-2.737;SOR=2.176;VQSLOD=-1.452e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,108:186:99:4747,0,3127
+chr6	57512788	.	T	TTA	4547.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.353;ClippingRankSum=-0.603;DP=171;FS=3.354;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=0;MQRankSum=-7.416;QD=26.59;ReadPosRankSum=-1.258;SOR=1.878;VQSLOD=-9.837e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,92:171:99:4585,0,3055
+chr6	57512792	rs372064495	T	C	3372.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=7.455;ClippingRankSum=-0.198;DB;DP=157;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=40.80;MQ0=0;MQRankSum=-6.089;NEGATIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-0.528;SOR=1.733;VQSLOD=-1.961e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:76,81:157:99:3401,0,3097
+chr6	57512793	rs368894562	AATT	A	3279.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=7.041;ClippingRankSum=-0.005;DB;DP=158;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=0;MQRankSum=-7.628;QD=20.76;ReadPosRankSum=-0.270;SOR=1.670;VQSLOD=-9.290e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,80:158:99:3317,0,3097
+chr6	57512825	rs72880943	C	T	1989.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.227;ClippingRankSum=-1.068;DB;DP=102;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=44.73;MQ0=0;MQRankSum=-6.811;NEGATIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.098;SOR=1.704;VQSLOD=-2.269e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,52:102:99:2018,0,1929
+chr6	57512826	rs7752845	A	G	1989.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=6.619;ClippingRankSum=1.207;DB;DP=100;FS=3.098;MLEAC=1;MLEAF=0.500;MQ=45.30;MQ0=0;MQRankSum=-6.799;NEGATIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.336;SOR=1.706;VQSLOD=-2.241e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,51:100:99:2018,0,1929
+chr6	57512841	rs78256005	A	G	630.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.056;ClippingRankSum=-0.094;DB;DP=79;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.16;MQ0=0;MQRankSum=-4.822;NEGATIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.275;SOR=0.455;VQSLOD=-3.272e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,21:79:99:659,0,2392
+chr6	57512850	rs77911716	C	G	547.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=-0.636;DB;DP=72;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.71;MQ0=0;MQRankSum=-4.402;NEGATIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=-1.021;SOR=0.357;VQSLOD=-2.865e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,17:72:99:576,0,2261
+chr6	57512874	rs71214002	G	A	206.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.499;ClippingRankSum=-0.194;DB;DP=49;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.30;MQ0=0;MQRankSum=-1.846;QD=4.22;ReadPosRankSum=1.072;SOR=0.058;VQSLOD=0.727;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,9:49:99:235,0,1573
+chr6	57512889	rs75351177	C	T	149.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464;ClippingRankSum=-0.226;DB;DP=38;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=-2.862;QD=3.94;ReadPosRankSum=-1.167;SOR=0.061;VQSLOD=-8.131e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,7:38:99:178,0,1252
+chr6	57512893	rs77348569	C	T	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=34;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.45;MQ0=0;MQRankSum=-2.215;QD=5.17;ReadPosRankSum=-0.852;SOR=0.078;VQSLOD=0.483;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,7:34:99:204,0,1222
+chr6	57512902	rs77563921	G	A	112.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0.900;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-1.860;QD=4.03;ReadPosRankSum=-1.140;SOR=0.061;VQSLOD=0.509;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,5:28:99:141,0,951
+chr6	57512903	rs75209982	C	A	112.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=-1.560;DB;DP=28;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-2.939;QD=4.03;ReadPosRankSum=-1.500;SOR=0.061;VQSLOD=-8.813e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,5:28:99:141,0,951
+chr6	57512906	rs77519815	T	A	337.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=1.732;DB;DP=27;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=0;MQRankSum=-3.289;QD=12.51;ReadPosRankSum=-2.536;SOR=0.317;VQSLOD=-8.036e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,10:27:99:366,0,726
+chr6	57512916	rs140176282	A	AT	70.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=-0.191;DB;DP=22;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.71;MQ0=0;MQRankSum=-1.244;QD=3.22;ReadPosRankSum=-0.670;SOR=0.039;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,3:22:99:108,0,828
+chr6	57513042	rs76730673	C	T	87.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=29.09;SOR=1.179;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
+chr6	57514007	rs4712214	A	G	66.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SOR=1.179;VQSLOD=7.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
+chr6	57514048	rs79485395	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57517722	rs75802839	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.43;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57517733	rs80270590	T	A	96.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=32.09;SOR=2.833;VQSLOD=6.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
+chr6	57517777	rs76191741	A	G	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.71;MQ0=0;MQRankSum=1.026;QD=3.96;ReadPosRankSum=0.000;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:37:48,0,37
+chr6	57517837	rs79522959	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57517838	rs1853506	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=7.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57517853	rs76412158	A	T	10.90	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.90;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0
+chr6	57518157	rs4993255	T	C	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=8.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	57519294	rs5017411	C	G	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57519302	rs79076980	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57519303	rs74656916	A	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57519820	rs7744217	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57521340	rs73755643	C	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57521352	rs74795344	A	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.08;SOR=1.609;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
+chr6	57521365	rs76281818	G	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57521370	rs61198018	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.32;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57522688	rs76632457	T	C	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=8.26;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:53,0,33
+chr6	57522722	rs80202467	G	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57522729	rs76599881	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57522740	rs78027687	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57522743	rs72880950	G	A	52.78	PASS	AC=1;AF=0.500;AN=2;DB;DP=2;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;QD=26.39;SOR=0.693;VQSLOD=7.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:0,2:2:26:81,0,26
+chr6	57522745	rs79247610	A	C	52.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:26:81,0,26
+chr6	57526215	rs5019459	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57526220	rs5019458	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57526231	rs5019457	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57526585	rs62405765	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57526610	rs4370353	C	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=17.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57527149	rs77487282	A	C	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=0.693;VQSLOD=7.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	57528643	rs4989228	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
+chr6	57529061	rs4580853	C	T	46.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.37;SOR=0.693;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr6	57529121	rs4236160	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57531762	rs2894929	A	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=6.20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57531763	rs4537146	G	A	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=6.20;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57536087	rs77762742	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57536105	rs77828016	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57538839	rs78941520	C	T	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=14.59;ReadPosRankSum=0.736;SOR=0.223;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:72,0,32
+chr6	57538866	rs80259399	C	T	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.026;SOR=0.693;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,118
+chr6	57538867	rs75525472	A	G	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=12.44;ReadPosRankSum=0.000;SOR=0.693;VQSLOD=4.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,118
+chr6	57538878	rs62405823	G	A	86.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;QD=21.69;ReadPosRankSum=-0.727;SOR=0.916;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:29:115,0,29
+chr6	57539231	rs73753049	C	T	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.804;DB;DP=2;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.804;QD=5.56;ReadPosRankSum=0.804;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,1:2:34:39,0,34
+chr6	57539244	rs77110690	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57539245	rs150830310	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57539260	rs73753050	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57539457	rs62405831	G	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57539460	rs35133381	AT	A	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=8.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57539480	rs2498202	T	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=6.95;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57544039	rs2498209	C	G	60.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SOR=1.179;VQSLOD=7.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
+chr6	57546228	rs12212539	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57546230	rs77288943	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57546234	rs12205399	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.35;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57546244	rs79029147	C	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57546251	rs78287808	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=32.99;SOR=1.609;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
+chr6	57546252	rs74936228	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.52;SOR=1.609;VQSLOD=6.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
+chr6	57546590	rs1853496	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57547418	rs76051348	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57547428	rs76625067	C	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57549247	rs2476489	C	G	16.63	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.63;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
+chr6	57550746	rs74923423	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57550797	rs78408847	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	57556582	rs2397904	C	T	14.68	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.68;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
+chr6	57556703	rs2397905	G	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SOR=0.693;VQSLOD=7.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	57556977	rs113627621	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57556995	rs113330746	A	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57557004	rs4425585	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57560942	rs3903831	C	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57560949	rs4097974	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57562969	rs77727649	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57564830	rs78356131	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57564831	rs77336271	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57564861	rs6932761	T	C	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=0.693;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	57565509	rs11965356	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57570509	rs78347797	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57570530	rs6903247	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57574113	rs5008152	G	A	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SOR=0.693;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	57574138	rs5008153	T	A	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SOR=1.179;VQSLOD=6.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	57576825	rs73755103	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57576836	rs73755104	T	G	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=6.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57576845	rs73755105	C	G	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57595707	rs72871580	T	C	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=0.736;QD=17.59;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57595709	rs72871582	C	T	52.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=17.59;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
+chr6	57595723	rs75919230	C	G	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=-0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=20.94;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=4.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:33:112,0,33
+chr6	57595732	rs72871584	G	T	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=20.94;ReadPosRankSum=-0.727;SOR=0.916;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:33:112,0,33
+chr6	57595770	rs73756249	A	G	34.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.000;QD=8.69;ReadPosRankSum=1.026;SOR=2.303;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:37:63,0,37
+chr6	57595781	rs73457550	G	A	33.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.026;SOR=2.303;VQSLOD=3.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:37:62,0,37
+chr6	57595820	rs73756251	T	G	76.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.727;QD=19.19;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:29:105,0,29
+chr6	57595832	rs77557182	T	C	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.804;DB;DP=2;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.804;QD=5.56;ReadPosRankSum=0.804;SOR=1.447	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,39
+chr6	57595845	rs76008427	A	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57597257	rs72871594	A	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.87;SOR=0.693;VQSLOD=7.04;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	57597260	rs72871595	A	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.27;SOR=1.609;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,1:1:6:79,6,0
+chr6	57603832	rs80257130	A	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57603839	rs147344208	A	AT	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=5.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57603845	rs72873407	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=7.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57606933	rs73757604	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=2.303;VQSLOD=7.85;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	57606965	rs74644238	T	G	66.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SOR=1.179;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
+chr6	57606996	rs73459287	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57607035	rs73757606	G	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57607044	rs73757607	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	57607068	rs72873457	C	T	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57607074	rs4360139	G	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	57608079	rs73459299	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57612661	.	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57618295	rs5876690	G	GA	25.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.86;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
+chr6	57673397	rs7765475	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57686962	rs140945786	G	T	100.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=1.754;DB;DP=7;FS=15.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.550;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.937;SOR=3.221;VQSLOD=0.651;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:99:129,0,102
+chr6	57699097	rs6459305	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57710858	rs149357140	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57711844	rs143767848	A	T	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=0.693;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	57723952	rs11295509	CA	C	37.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.42;SOR=1.179;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:74,9,0
+chr6	57732063	.	C	A	12.13	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=3.03;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:17:40,0,17
+chr6	57737999	rs142093663	G	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=27.87;SOR=0.693;VQSLOD=6.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	57738613	.	C	T	20.78	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.39;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	57785184	rs116169256	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57826827	.	TA	T	24.72	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=12.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	57841273	rs188364530	C	T	1364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628;ClippingRankSum=0.296;DB;DP=85;FS=7.134;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=1.622;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.110;SOR=0.843;VQSLOD=1.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1393,0,1205
+chr6	57841320	rs140816261	G	T	1315.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;ClippingRankSum=-0.287;DB;DP=83;FS=5.670;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-0.132;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.515;SOR=1.312;VQSLOD=1.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1344,0,1358
+chr6	57841627	rs149540211	AC	A	954.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.306;DB;DP=80;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=1.819;QD=11.93;ReadPosRankSum=-1.129;SOR=0.798;VQSLOD=0.740;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,36:78:99:992,0,1172
+chr6	57842518	rs149985050	G	T	70.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.937;SOR=0.495;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,3:7:99:99,0,144
+chr6	57843574	rs115026909	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57857856	rs3000344	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=21.37;SOR=0.693;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	57972306	rs55752203	TG	T	24.72	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=12.36;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr6	57977600	rs115553313	C	T	97.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SOR=1.179;VQSLOD=8.27;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
+chr6	57977640	rs4960490	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	57998262	rs9476413	T	C	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	58028492	rs147632909	C	A	37.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.000;SOR=2.303;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,74
+chr6	58039789	rs9382925	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	58165037	.	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	58165039	.	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=31.37;SOR=0.693;VQSLOD=6.45;culprit=DP	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	58165065	.	GT	G	53.70	PASS	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	58173632	rs114670858	T	G	20.78	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.39;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	58246055	rs6918567	T	C	2357.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=-0.427;DB;DP=249;FS=6.315;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=0;MQRankSum=-11.921;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=2.161;SOR=1.112;VQSLOD=-3.174e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:179,69:248:99:2386,0,8176
+chr6	58246056	rs6930828	G	A	2357.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;ClippingRankSum=0.056;DB;DP=250;FS=5.251;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-11.878;QD=9.43;ReadPosRankSum=-0.007;SOR=1.079;VQSLOD=-4.553e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:179,70:249:99:2386,0,8176
+chr6	58246143	rs6931014	G	A	3997.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=-0.730;DB;DP=326;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=0;MQRankSum=-4.926;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=3.641;SOR=0.631;VQSLOD=-1.659e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:186,138:324:99:4026,0,5840
+chr6	58250570	rs9500243	A	T	402.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.754;DB;DP=40;FS=8.709;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=0.698;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=0.112;SOR=0.032;VQSLOD=1.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,15:40:99:431,0,789
+chr6	58252949	.	A	G	37.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=-0.684;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=36.30;MQ0=0;MQRankSum=-0.684;QD=4.72;ReadPosRankSum=0.322;SOR=0.368;VQSLOD=3.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,3:8:66:66,0,144
+chr6	58260059	rs74657950	G	A	177.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=0.058;DB;DP=15;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.79;MQ0=0;MQRankSum=-2.025;QD=11.85;ReadPosRankSum=0.984;SOR=0.582;VQSLOD=2.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:206,0,240
+chr6	58260138	rs62464086	A	G	246.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=-0.921;DB;DP=43;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-2.308;QD=5.74;ReadPosRankSum=0.921;SOR=0.569;VQSLOD=0.439;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,14:42:99:275,0,785
+chr6	58263609	rs4079740	A	G	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=-1.231;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.65;MQ0=0;MQRankSum=-1.231;QD=3.57;ReadPosRankSum=0.358;SOR=0.446	GT:AD:DP:GQ:PL	0/1:3,2:5:46:46,0,99
+chr6	58263871	rs6588681	T	C	325.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=-0.055;DB;DP=33;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=0;MQRankSum=-2.022;QD=9.87;ReadPosRankSum=1.730;SOR=0.941;VQSLOD=1.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,14:33:99:354,0,577
+chr6	58263932	rs1810425	G	A	548.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=-0.644;DB;DP=42;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=56.18;MQ0=0;MQRankSum=-0.407;QD=13.07;ReadPosRankSum=-0.223;SOR=1.002;VQSLOD=1.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,18:41:99:577,0,758
+chr6	58263952	rs1810426	A	G	478.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.162;ClippingRankSum=-0.058;DB;DP=46;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=1.471;QD=10.41;ReadPosRankSum=0.683;SOR=1.251;VQSLOD=1.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,18:45:99:507,0,927
+chr6	58265128	rs9391382	T	C	346.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=-0.596;DB;DP=54;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.99;MQ0=0;MQRankSum=-5.275;NEGATIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=-1.037;SOR=0.793;VQSLOD=-3.620e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,18:54:99:375,0,1179
+chr6	58265398	rs17488291	G	A	1245.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.505;DB;DP=89;FS=7.385;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=0;MQRankSum=-1.229;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=1.648;SOR=1.478;VQSLOD=1.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:47,42:89:99:1274,0,1450
+chr6	58265469	.	G	GTTT	400.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=1.203;DP=68;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.92;MQ0=0;MQRankSum=-3.451;QD=5.89;ReadPosRankSum=-0.359;SOR=0.651;VQSLOD=1.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,19:53:99:438,0,1230
+chr6	58273526	rs4928423	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	58287821	rs9404620	A	G	128.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.876;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=0.729;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=0.000;SOR=0.892;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:157,0,118
+chr6	58294828	rs2012049	C	T	129.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;ClippingRankSum=-0.251;DB;DP=17;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=0;MQRankSum=-2.161;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=-0.151;SOR=1.688;VQSLOD=0.937;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,6:17:99:158,0,414
+chr6	58302194	rs693484	T	A	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=0.693;VQSLOD=8.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	58365506	rs60186309	T	TA	41.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.85;SOR=0.693;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
+chr6	58447068	rs1224740	A	G	1017.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=-0.222;DB;DP=64;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=0.316;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.356;SOR=1.296;VQSLOD=3.10;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,32:64:99:1046,0,1021
+chr6	58465552	rs1224802	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	58490384	rs7770844	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	58693830	rs2343003	A	C	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SOR=2.303;VQSLOD=9.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	58735978	rs2343014	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	58776289	rs4357163	T	G	186.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.775;DB;DP=26;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=33.30;MQ0=0;MQRankSum=-1.085;QD=7.18;ReadPosRankSum=0.837;SOR=1.460;VQSLOD=0.168;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:23:99:215,0,418
+chr6	58776318	rs9986349	A	G	261.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=-0.152;DB;DP=22;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=0;MQRankSum=-0.684;QD=11.90;ReadPosRankSum=-0.304;SOR=0.243;VQSLOD=1.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:99:290,0,435
+chr6	58776319	rs9638012	C	T	871.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=28.76;SOR=2.093;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:900,60,0
+chr6	58776352	rs4317432	T	C	267.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=-0.318;DB;DP=17;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=0;MQRankSum=-0.847;QD=15.75;ReadPosRankSum=-1.059;SOR=0.653;VQSLOD=4.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,9:16:99:296,0,314
+chr6	58776411	rs9638013	A	G	364.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;ClippingRankSum=-1.415;DB;DP=18;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=0;MQRankSum=-0.283;QD=20.26;ReadPosRankSum=0.962;SOR=0.148;VQSLOD=1.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,13:17:99:393,0,132
+chr6	58776442	rs9638019	T	C	491.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.381;DB;DP=25;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;MQRankSum=-0.498;QD=19.67;ReadPosRankSum=0.088;SOR=1.863;VQSLOD=1.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,14:24:99:520,0,292
+chr6	58776542	rs4524636	G	A	45.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.115;DB;DP=64;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=48.96;MQ0=0;MQRankSum=0.136;NEGATIVE_TRAIN_SITE;QD=0.72;ReadPosRankSum=-0.073;SOR=1.179;VQSLOD=-1.126e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,8:62:74:74,0,1805
+chr6	58776555	rs4928523	T	C	742.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=-0.403;DB;DP=63;FS=9.224;MLEAC=1;MLEAF=0.500;MQ=49.77;MQ0=0;MQRankSum=0.433;QD=11.79;ReadPosRankSum=1.884;SOR=1.229;VQSLOD=4.000e-03;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,25:61:99:771,0,1202
+chr6	58776592	rs9377908	A	G	222.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;ClippingRankSum=-0.434;DB;DP=74;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=54.28;MQ0=0;MQRankSum=0.889;NEGATIVE_TRAIN_SITE;QD=3.01;ReadPosRankSum=0.918;SOR=0.460;VQSLOD=-9.187e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,14:72:99:251,0,2116
+chr6	58776745	rs9632507	C	T	3168.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=32.18;SOR=0.927;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3197,226,0
+chr6	58776782	rs9632508	A	T	3215.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=30.10;SOR=0.887;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3244,240,0
+chr6	58776802	rs4401693	T	G	670.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=-0.171;DB;DP=80;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=54.82;MQ0=0;MQRankSum=2.069;QD=8.38;ReadPosRankSum=0.137;SOR=1.112;VQSLOD=-5.951e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,25:74:99:699,0,1658
+chr6	58776855	rs4928552	A	G	1233.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.370;DB;DP=79;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=1.187;QD=15.62;ReadPosRankSum=-0.469;SOR=0.872;VQSLOD=1.36;culprit=DP	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1262,0,1231
+chr6	58776887	rs113904338	A	G	105.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;ClippingRankSum=-1.479;DB;DP=74;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=1.286;NEGATIVE_TRAIN_SITE;QD=1.43;ReadPosRankSum=1.305;SOR=1.159;VQSLOD=-1.368e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:59,8:67:99:134,0,2069
+chr6	58776958	rs4562168	A	T	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=1.153;DB;DP=68;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=0.582;QD=0.57;ReadPosRankSum=1.725;SOR=0.941;VQSLOD=0.880;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,7:65:67:67,0,2198
+chr6	58776965	rs9632509	C	T	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=-1.381;DB;DP=72;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=1.202;QD=0.26;ReadPosRankSum=1.441;SOR=0.796	GT:AD:DP:GQ:PL	0/1:62,7:69:47:47,0,2234
+chr6	58776982	rs9632510	G	T	1497.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;ClippingRankSum=0.065;DB;DP=67;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=51.72;MQ0=0;MQRankSum=-0.411;QD=22.35;ReadPosRankSum=-0.887;SOR=0.510;VQSLOD=-2.878e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,46:65:99:1526,0,547
+chr6	58776984	rs56092323	A	T	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.603;DB;DP=67;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.72;MQ0=0;MQRankSum=1.386;QD=0.59;ReadPosRankSum=1.323;SOR=0.787;VQSLOD=0.978;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,7:65:68:68,0,2352
+chr6	58777039	rs28781680	G	A	376.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=-0.924;DB;DP=63;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=0;MQRankSum=1.682;QD=5.98;ReadPosRankSum=-0.766;SOR=1.179;VQSLOD=-5.013e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,16:63:99:405,0,1853
+chr6	58777056	rs9654654	G	T	772.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.839;DB;DP=64;FS=5.150;MLEAC=1;MLEAF=0.500;MQ=45.93;MQ0=0;MQRankSum=1.899;QD=12.07;ReadPosRankSum=-0.041;SOR=1.004;VQSLOD=0.153;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,25:64:99:801,0,1404
+chr6	58777074	rs4388312	C	T	822.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=-1.281;DB;DP=65;FS=6.614;MLEAC=1;MLEAF=0.500;MQ=49.69;MQ0=0;MQRankSum=0.164;QD=12.66;ReadPosRankSum=-1.018;SOR=0.612;VQSLOD=0.293;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,31:65:99:851,0,1154
+chr6	58777106	rs4610595	A	G	643.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=1.422;DB;DP=67;FS=5.024;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-0.611;QD=9.61;ReadPosRankSum=0.573;SOR=0.565;VQSLOD=0.035;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,26:67:99:672,0,1465
+chr6	58777109	rs9647639	C	T	510.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.783;DB;DP=69;FS=9.064;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=0.783;NEGATIVE_TRAIN_SITE;QD=7.40;ReadPosRankSum=-1.203;SOR=1.679;VQSLOD=-1.890e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,23:69:99:539,0,1603
+chr6	58777156	rs4577825	C	G	121.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.330;DB;DP=81;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=1.120;NEGATIVE_TRAIN_SITE;QD=1.50;ReadPosRankSum=-0.258;SOR=1.196;VQSLOD=-2.068e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:67,11:78:99:150,0,2400
+chr6	58777178	rs9638022	G	T	2960.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=28.06;SOR=0.774;VQSLOD=5.10;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2989,229,0
+chr6	58777233	rs4336468	C	T	554.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=-1.640;DB;DP=65;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=0.052;QD=8.53;ReadPosRankSum=0.696;SOR=0.914;VQSLOD=0.514;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,19:63:99:583,0,1593
+chr6	58777237	rs4518527	A	G	633.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.144;ClippingRankSum=0.639;DB;DP=59;FS=5.406;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.634;QD=10.74;ReadPosRankSum=-0.971;SOR=0.569;VQSLOD=-4.540e-02;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,24:58:99:662,0,1277
+chr6	58777276	rs4446588	A	C	897.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;ClippingRankSum=0.236;DB;DP=62;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=1.879;QD=14.48;ReadPosRankSum=0.023;SOR=0.662;VQSLOD=0.954;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,27:59:99:926,0,946
+chr6	58777295	rs9638023	T	C	2798.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=33.48;SOR=0.790;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2827,196,0
+chr6	58777312	rs9632511	T	C	759.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=-1.050;DB;DP=72;FS=11.531;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=-1.776;QD=10.55;ReadPosRankSum=0.984;SOR=1.631;VQSLOD=-1.664e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,23:67:99:788,0,1478
+chr6	58777366	rs9632513	A	G	2731.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=29.84;SOR=0.756;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2760,199,0
+chr6	58777546	rs9632515	G	A	2432.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=30.91;SOR=0.723;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2461,201,0
+chr6	58777573	rs9632516	C	T	2295.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.251;ClippingRankSum=1.138;DB;DP=66;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.559;NEGATIVE_TRAIN_SITE;QD=34.78;ReadPosRankSum=1.794;SOR=0.826;VQSLOD=-6.277e-01;culprit=QD	GT:AD:DP:GQ:PL	1/1:2,62:64:99:2324,117,0
+chr6	58777583	rs4351287	A	G	250.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.238;DB;DP=69;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-0.221;QD=3.63;ReadPosRankSum=0.648;SOR=0.717;VQSLOD=-7.794e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,13:65:99:279,0,1731
+chr6	58777599	.	T	G	144.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=-0.957;DP=71;FS=5.022;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-0.563;NEGATIVE_TRAIN_SITE;QD=2.04;ReadPosRankSum=-0.063;SOR=0.899;VQSLOD=-1.822e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,10:66:99:173,0,1929
+chr6	58777775	.	A	C	471.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.625;DP=64;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=0.170;QD=7.37;ReadPosRankSum=1.517;SOR=0.904;VQSLOD=0.168;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,19:59:99:500,0,1465
+chr6	58777789	rs4296911	T	C	850.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=-0.201;DB;DP=67;FS=8.737;MLEAC=1;MLEAF=0.500;MQ=55.92;MQ0=0;MQRankSum=0.892;QD=12.70;ReadPosRankSum=-2.082;SOR=0.733;VQSLOD=-2.447e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,28:63:99:879,0,1323
+chr6	58777828	rs11211786	G	A	652.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=-0.018;DB;DP=77;FS=10.707;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=2.081;NEGATIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.651;SOR=1.322;VQSLOD=-1.674e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,26:72:99:681,0,1420
+chr6	58777836	rs9632517	A	C	2870.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=28.37;SOR=0.811;VQSLOD=2.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2899,214,0
+chr6	58777939	rs9632518	G	A	2463.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=25.14;SOR=1.143;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2492,187,0
+chr6	58777952	rs4546514	A	G	853.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230;ClippingRankSum=-1.282;DB;DP=63;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=43.01;MQ0=0;MQRankSum=1.134;QD=13.55;ReadPosRankSum=2.245;SOR=0.460;VQSLOD=1.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,32:60:99:882,0,851
+chr6	58778001	.	G	A	533.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=-0.800;DP=68;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=45.56;MQ0=0;MQRankSum=-0.598;QD=7.85;ReadPosRankSum=0.699;SOR=0.563;VQSLOD=-6.300e-02;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,22:63:99:562,0,1296
+chr6	58778019	rs9638027	T	G	165.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=-1.301;DB;DP=72;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=45.92;MQ0=0;MQRankSum=1.339;NEGATIVE_TRAIN_SITE;QD=2.30;ReadPosRankSum=0.522;SOR=1.106;VQSLOD=-1.041e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,9:65:99:194,0,2191
+chr6	58778025	rs9638028	A	G	2317.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=-0.113;DB;DP=72;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=0;MQRankSum=-0.523;QD=32.19;ReadPosRankSum=0.277;SOR=0.604;VQSLOD=0.716;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,60:67:99:2346,0,110
+chr6	58778036	rs9404685	A	C	534.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=-1.103;DB;DP=69;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.49;MQ0=0;MQRankSum=-0.499;QD=7.75;ReadPosRankSum=1.173;SOR=0.668;VQSLOD=2.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,25:63:99:563,0,1164
+chr6	58778039	rs9638014	G	C	2754.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=30.33;SOR=0.790;VQSLOD=5.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2783,190,0
+chr6	58778081	rs4389792	T	G	2804.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=36.83;SOR=0.865;VQSLOD=3.57;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2833,190,0
+chr6	58778082	rs4346876	T	C	2759.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=35.85;SOR=0.865;VQSLOD=5.04;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2788,187,0
+chr6	58778100	rs9391506	A	T	94.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=-0.536;DB;DP=63;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=0;MQRankSum=-0.098;QD=1.50;ReadPosRankSum=-0.930;SOR=0.801;VQSLOD=0.858;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,9:57:99:123,0,1551
+chr6	58778108	rs4308591	G	C	2796.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.44;SOR=1.092;VQSLOD=3.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2825,196,0
+chr6	58778145	rs9500568	T	C	228.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.435;DB;DP=69;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=0.074;QD=3.32;ReadPosRankSum=0.631;SOR=0.425;VQSLOD=-7.171e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,13:65:99:257,0,1648
+chr6	58778148	rs12213271	T	C	43.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.210;DB;DP=69;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=-2.466;NEGATIVE_TRAIN_SITE;QD=0.63;ReadPosRankSum=-1.168;SOR=0.796;VQSLOD=-1.747e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:57,8:65:72:72,0,1899
+chr6	58778190	rs9767581	T	G	325.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=-0.571;DB;DP=71;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=0.860;QD=4.59;ReadPosRankSum=0.340;SOR=0.886;VQSLOD=-4.734e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,16:68:99:354,0,1641
+chr6	58778207	rs6588729	G	A	2273.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=-1.397;DB;DP=65;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.950;NEGATIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=-1.341;SOR=0.236;VQSLOD=-1.078e+00;culprit=QD	GT:AD:DP:GQ:PL	1/1:1,61:62:99:2302,182,0
+chr6	58778244	rs6588730	A	T	2044.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=31.46;SOR=0.760;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2073,180,0
+chr6	58778404	rs6588731	C	A	2347.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=32.04;SOR=0.808;VQSLOD=5.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2376,160,0
+chr6	58778405	rs6588732	C	T	2392.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=27.48;SOR=0.770;VQSLOD=4.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2421,163,0
+chr6	58778412	rs6588733	T	C	2705.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=34.01;SOR=0.762;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2734,184,0
+chr6	58778452	rs4928629	A	C	970.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;ClippingRankSum=-0.744;DB;DP=64;FS=5.099;MLEAC=1;MLEAF=0.500;MQ=55.54;MQ0=0;MQRankSum=2.130;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=1.163;SOR=1.249;VQSLOD=1.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,32:61:99:999,0,986
+chr6	58778456	.	G	T	154.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=-0.534;DP=68;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=1.216;NEGATIVE_TRAIN_SITE;QD=2.28;ReadPosRankSum=0.079;SOR=0.654;VQSLOD=-8.069e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,11:65:99:183,0,2074
+chr6	58778482	rs6588734	G	A	2628.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=31.77;SOR=0.906;VQSLOD=3.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2657,190,0
+chr6	58778519	rs4928633	A	G	847.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=-1.803;DB;DP=75;FS=6.752;MLEAC=1;MLEAF=0.500;MQ=54.72;MQ0=0;MQRankSum=-1.213;QD=11.30;ReadPosRankSum=0.443;SOR=1.183;VQSLOD=-4.825e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,24:68:99:876,0,1700
+chr6	58778530	rs9647643	T	C	919.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=3.069;ClippingRankSum=-0.130;DB;DP=71;FS=8.855;MLEAC=1;MLEAF=0.500;MQ=54.76;MQ0=0;MQRankSum=-0.936;QD=12.95;ReadPosRankSum=-0.567;SOR=1.363;VQSLOD=-7.510e-02;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,26:64:99:948,0,1688
+chr6	58778531	rs9647644	A	C	922.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.934;DB;DP=70;FS=8.966;MLEAC=1;MLEAF=0.500;MQ=54.68;MQ0=0;MQRankSum=-1.454;QD=13.18;ReadPosRankSum=-0.204;SOR=1.572;VQSLOD=-3.370e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,25:63:99:951,0,1651
+chr6	58778577	rs6588735	T	A	348.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.432;DB;DP=70;FS=8.999;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=-0.934;NEGATIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=0.225;SOR=0.956;VQSLOD=-2.510e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,13:62:99:377,0,2028
+chr6	58778584	rs6588736	T	G	310.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0.859;DB;DP=67;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=0.896;QD=4.64;ReadPosRankSum=0.545;SOR=0.275;VQSLOD=-1.432e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,12:60:99:339,0,2037
+chr6	58778664	rs112323615	T	G	597.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=-0.755;DB;DP=68;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=0.959;QD=8.79;ReadPosRankSum=-0.864;SOR=0.980;VQSLOD=-2.673e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,22:66:99:626,0,1333
+chr6	58778716	rs7453620	A	C	1189.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=-0.970;DB;DP=79;FS=6.175;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-0.769;QD=15.06;ReadPosRankSum=-1.098;SOR=0.261;VQSLOD=0.195;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1218,0,1070
+chr6	58778747	rs12214947	T	C	88.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=-1.054;DB;DP=88;FS=4.622;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=0.705;NEGATIVE_TRAIN_SITE;QD=1.01;ReadPosRankSum=1.189;SOR=0.575;VQSLOD=-2.375e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:72,11:83:99:117,0,2437
+chr6	58778788	rs6651013	T	C	3397.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=34.32;SOR=0.976;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3426,282,0
+chr6	58778844	rs7452594	C	G	898.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=-0.341;DB;DP=82;FS=12.217;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=0.289;QD=10.96;ReadPosRankSum=1.634;SOR=1.334;VQSLOD=-6.564e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,29:78:99:927,0,1649
+chr6	58778922	rs6651011	C	A	2529.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;ClippingRankSum=1.147;DB;DP=74;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.586;NEGATIVE_TRAIN_SITE;QD=34.19;ReadPosRankSum=-0.952;SOR=0.246;VQSLOD=-1.389e+00;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,70:71:99:2558,204,0
+chr6	58778989	rs6651015	T	C	2986.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=37.21;SOR=0.722;VQSLOD=4.76;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,69:69:99:3015,208,0
+chr6	58779007	rs6651016	C	T	3187.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=33.52;SOR=0.836;VQSLOD=5.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3216,223,0
+chr6	58779056	rs6937914	T	C	824.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0.011;DB;DP=75;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-1.194;QD=11.00;ReadPosRankSum=0.535;SOR=0.535;VQSLOD=0.407;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,31:72:99:853,0,1368
+chr6	58779089	rs4286808	C	A	635.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=-1.111;DB;DP=63;FS=14.811;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.125;NEGATIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.169;SOR=1.477;VQSLOD=-1.459e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,22:62:99:664,0,1572
+chr6	58779097	rs9500231	A	G	1804.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=1.075;DB;DP=68;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-0.173;QD=26.54;ReadPosRankSum=0.414;SOR=0.501;VQSLOD=-2.854e-01;culprit=DP	GT:AD:DP:GQ:PL	0/1:15,52:67:99:1833,0,403
+chr6	58779308	rs6651018	T	C	16.86	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=-0.972;DB;DP=51;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=0;MQRankSum=-0.526;QD=0.33;ReadPosRankSum=0.430;SOR=0.783	GT:AD:DP:GQ:PL	0/1:42,6:48:45:45,0,1235
+chr6	58779328	rs6651019	A	G	1227.77	VQSRTrancheSNP99.00to99.90	AC=2;AF=1.00;AN=2;BaseQRankSum=0.974;ClippingRankSum=-1.310;DB;DP=39;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=0.772;QD=31.48;ReadPosRankSum=1.511;SOR=1.675;VQSLOD=0.201;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,35:37:38:1256,38,0
+chr6	58779346	rs4376372	T	G	350.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=-0.500;DB;DP=32;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=39.86;MQ0=0;MQRankSum=0.460;QD=10.96;ReadPosRankSum=-0.500;SOR=1.292;VQSLOD=1.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,13:31:99:379,0,605
+chr6	58779375	rs4250419	A	G	273.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=-0.971;DB;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=-0.442;QD=15.21;ReadPosRankSum=-1.589;SOR=1.781;VQSLOD=3.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:302,0,370
+chr6	58779376	rs6651020	C	T	736.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=27.25;SOR=4.294;VQSLOD=5.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:54:765,54,0
+chr6	58779409	rs4400241	T	C	160.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.793;ClippingRankSum=1.461;DB;DP=12;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=32.29;MQ0=0;MQRankSum=0.529;QD=13.40;ReadPosRankSum=1.788;SOR=1.371;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,263
+chr6	58779468	rs6651021	A	G	83.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=30.90;MQ0=0;MQRankSum=-0.727;QD=20.94;ReadPosRankSum=0.727;SOR=1.609;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:28:112,0,28
+chr6	58779499	rs6651022	T	C	49.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=-1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.026;QD=12.44;ReadPosRankSum=1.026;SOR=0.693;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:54:78,0,54
+chr6	61892431	rs4467815	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61909056	rs189688252	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61924395	rs74442497	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61924424	rs149028611	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61939361	rs76899121	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61967504	rs704487	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61967842	rs79961499	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	61984979	.	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
+chr6	62017935	rs1997843	T	C	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=0.693;VQSLOD=9.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	62024599	rs1414786	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62027240	rs1074429	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62034435	rs115639864	C	T	36.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.406;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=0.406;QD=6.13;ReadPosRankSum=-0.406;SOR=0.693;VQSLOD=4.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,3:6:65:65,0,104
+chr6	62084214	rs3908837	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62114785	rs7742522	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62183331	rs2092608	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62183845	rs35300708	C	CT	19.75	LowQual	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.58;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
+chr6	62198757	rs6916640	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62208255	rs116736672	G	A	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=8.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	62217827	rs415716	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62220171	rs387256	A	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=8.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	62233173	rs214151	G	C	71.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=17.76;SOR=0.693;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
+chr6	62236450	rs116060945	A	T	18.80	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.40;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:46,6,0
+chr6	62252108	rs4598053	C	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	62252188	rs67145854	GA	G	75.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SOR=1.179;VQSLOD=8.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
+chr6	62269382	rs59519746	T	C	18.59	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
+chr6	62269405	rs56095991	G	T	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	62290945	rs140805963	G	A	44.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
+chr6	62294589	rs115452241	T	C	55.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.43;SOR=1.179;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
+chr6	62316285	rs213776	A	C	47.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.026;SOR=0.693;VQSLOD=5.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:67:76,0,67
+chr6	62329027	rs201975337	A	AT	15.82	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=7.91;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
+chr6	62390916	rs1204114	T	C	2091.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SOR=0.765;VQSLOD=6.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2120,168,0
+chr6	62413546	rs1204139	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62495041	rs78507898	T	A	20.78	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.39;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	62510310	rs1743448	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62515335	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62532253	rs571607	G	C	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SOR=0.693;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	62582748	.	G	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=4.02;ReadPosRankSum=0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
+chr6	62604848	.	T	TTC	69.25	PASS	AC=2;AF=1.00;AN=2;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.85;SOR=2.303;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:9:106,9,0
+chr6	62650334	rs1114027	T	A	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=0.693;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	62674103	rs1192455	C	T	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=9.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	62674110	rs1192454	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	62686434	rs1192430	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62690574	rs1393669	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62706684	rs2102790	C	T	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.303;VQSLOD=7.03;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	62708691	rs9453889	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	62757987	rs9346001	C	T	744.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.028;DB;DP=52;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.661;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=1.294;SOR=0.546;VQSLOD=5.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,24:52:99:773,0,900
+chr6	62886921	rs10455666	C	T	184.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=-0.572;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.067;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=-0.572;SOR=1.863;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:8:59:213,0,59
+chr6	62887031	rs9346218	C	T	1086.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=1.848;DB;DP=62;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.846;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-0.056;SOR=0.846;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1115,0,921
+chr6	62887099	rs6921170	C	T	1783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.393;ClippingRankSum=0.055;DB;DP=121;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.039;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-0.465;SOR=0.841;VQSLOD=2.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:60,60:120:99:1812,0,2047
+chr6	62995920	rs16883133	T	G	157.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=-0.572;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=1.067;SOR=0.693;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:8:55:186,0,55
+chr6	63018890	rs9354897	A	G	47.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.76;SOR=1.179;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
+chr6	63022153	rs523967	G	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.303;VQSLOD=9.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	63022286	rs62414811	G	A	58.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=8.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
+chr6	63046505	rs508263	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	63104500	rs2814661	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63116886	rs2452472	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63123748	rs2814696	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63139149	rs2452463	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63167529	rs2881136	G	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	63171060	rs17381471	C	T	645.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=-0.249;DB;DP=71;FS=9.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.188;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-0.067;SOR=2.159;VQSLOD=0.690;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,24:71:99:674,0,1531
+chr6	63171544	rs648165	A	T	113.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=-0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.380;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=1.380;SOR=1.329;VQSLOD=6.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:62:142,0,62
+chr6	63251196	rs2345983	C	T	109.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=-0.550;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-0.550;SOR=0.941;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:7:90:138,0,90
+chr6	63257354	rs9446610	C	T	1142.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;ClippingRankSum=-0.017;DB;DP=75;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-0.447;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.337;SOR=0.935;VQSLOD=3.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,35:73:99:1171,0,1224
+chr6	63257971	rs6913632	T	C	1383.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.127;DB;DP=63;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=1.565;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-0.367;SOR=0.382;VQSLOD=1.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,44:63:99:1412,0,451
+chr6	63258233	rs11447029	C	CA	15.85	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-1.371;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.065;QD=0.99;ReadPosRankSum=0.588;SOR=0.160	GT:AD:DP:GQ:PL	0/1:11,4:15:53:53,0,220
+chr6	63290332	rs9351926	C	A	41.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:70,0,36
+chr6	63309881	rs73762312	G	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	63356605	rs4710365	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63357734	rs66885289	CTT	C	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=7.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	63370591	rs7776261	C	A	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=2.303;VQSLOD=8.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	63370651	rs7761764	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63394799	rs4131720	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63426649	rs2752973	C	T	43.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.736;SOR=2.225;VQSLOD=2.74;culprit=DP	GT:AD:DP:GQ:PL	0/1:1,2:3:32:72,0,32
+chr6	63480621	rs6937512	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63508240	rs4710370	A	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=8.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	63508253	rs4710371	T	A	14.68	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.68;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
+chr6	63520794	rs7746171	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63522176	rs9352169	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63567509	rs11961562	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63576005	rs55851245	C	G	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=0.693;VQSLOD=8.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	63584587	rs12207161	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.52;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	63584592	rs12208504	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.693;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	63596076	rs7747071	G	A	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=8.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	63596112	rs4307155	C	T	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	63607258	rs10943283	C	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=9.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	63727757	rs9343533	C	A	287.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SOR=2.833;VQSLOD=6.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
+chr6	63730222	rs9352418	G	T	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=8.08;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	63730266	rs9343536	T	C	47.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.87;SOR=0.693;VQSLOD=8.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	63733880	rs10943404	G	T	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=2.303;VQSLOD=8.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	63749658	rs6936280	A	G	59.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.303;VQSLOD=8.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
+chr6	63749860	rs6941288	T	C	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SOR=0.693;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	63753907	rs12208886	A	G	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=7.60;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	63757242	.	G	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63775888	rs789964	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63785384	rs789954	G	A	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=0.693;VQSLOD=7.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	63792401	rs1086295	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63863011	rs57238578	G	GGTTGTT	44.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;SOR=2.303;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	63874309	rs9343765	G	A	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=2.303;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	63874499	rs7747081	C	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=8.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	63885713	rs3059784	T	TTG	26.71	LowQual	AC=2;AF=1.00;AN=2;DB;DP=1;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,1:1:6:63,6,0
+chr6	63885782	rs1020805	T	G	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=8.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	63902995	rs1847501	G	T	1552.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.223;ClippingRankSum=0.500;DB;DP=79;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.817;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=-0.005;SOR=0.743;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1581,0,943
+chr6	63903354	rs16893840	G	T	550.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.804;DB;DP=38;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-0.219;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.570;SOR=0.754;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:579,0,671
+chr6	63903377	rs6914331	G	A	1128.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.22;SOR=1.609;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1157,84,0
+chr6	63903384	rs2047899	G	T	382.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=-0.528;DB;DP=28;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.080;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.345;SOR=0.269;VQSLOD=2.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:411,0,430
+chr6	63903574	rs142293404	GAAGGAGC	G	121.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=1.754;DB;DP=8;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-1.754;QD=15.22;ReadPosRankSum=0.000;SOR=2.494;VQSLOD=0.824;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,331
+chr6	63903606	rs116456502	G	A	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=6;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-1.380;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=1.231;SOR=3.258;VQSLOD=1.17;culprit=DP	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,243
+chr6	63921361	rs4710420	A	G	237.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SOR=4.407;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:266,24,0
+chr6	63921442	rs76273486	G	A	318.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.127;ClippingRankSum=-0.433;DB;DP=17;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=51.85;MQ0=0;MQRankSum=2.261;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=1.299;SOR=1.981;VQSLOD=1.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:347,0,251
+chr6	63921456	rs79100944	G	A	493.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.628;ClippingRankSum=-0.102;DB;DP=22;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=1.740;QD=22.44;ReadPosRankSum=1.604;SOR=1.402;VQSLOD=0.390;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:522,0,233
+chr6	63921924	rs9359357	A	G	278.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=-1.184;DB;DP=19;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-1.347;QD=14.67;ReadPosRankSum=1.266;SOR=1.609;VQSLOD=3.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:307,0,291
+chr6	63933615	rs9352684	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63937797	rs12526013	T	C	105.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;ClippingRankSum=-0.735;DB;DP=23;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.41;MQ0=0;MQRankSum=-0.385;POSITIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=0.175;SOR=0.141;VQSLOD=3.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:99:134,0,553
+chr6	63937863	rs3925806	T	C	119.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;ClippingRankSum=0.720;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.720;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=0.720;SOR=0.368;VQSLOD=6.05;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:60:148,0,60
+chr6	63937916	rs3925805	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	63939795	rs1809272	T	C	2647.77	VQSRTrancheSNP99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.907;ClippingRankSum=0.336;DB;DP=202;FS=8.305;MLEAC=1;MLEAF=0.500;MQ=53.46;MQ0=0;MQRankSum=-3.258;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.632;SOR=0.350;VQSLOD=-4.749e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:107,93:200:99:2676,0,3595
+chr6	63939829	rs1809271	A	T	8543.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=238;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SOR=0.925;VQSLOD=3.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,237:237:99:8572,713,0
+chr6	63940061	rs4035417	A	G	1171.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;ClippingRankSum=-0.144;DB;DP=64;FS=5.367;MLEAC=1;MLEAF=0.500;MQ=51.76;MQ0=0;MQRankSum=-3.916;NEGATIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=1.606;SOR=0.207;VQSLOD=-1.900e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,38:64:99:1200,0,790
+chr6	63940313	rs6905048	A	C	40.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.37;SOR=2.303;VQSLOD=6.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
+chr6	63969766	rs9352729	A	G	60.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;SOR=2.303;VQSLOD=7.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
+chr6	63990648	rs35296992	A	G	956.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=-0.057;DB;DP=88;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.678;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-0.582;SOR=0.521;VQSLOD=1.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,33:87:99:985,0,1782
+chr6	64126837	rs149978231	T	TAC	29.71	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;QD=14.85;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
+chr6	64147016	rs144385019	AAGAAAGGGAGAAGGAAAAGAAAGAAAGG	A	85.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.12;MQ0=0;MQRankSum=-0.727;QD=21.43;ReadPosRankSum=0.727;SOR=1.609;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:4:99:123,0,203
+chr6	64150689	rs10755410	G	A	62.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=-0.740;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.185;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=1.849;SOR=0.582;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:91:91,0,260
+chr6	64151093	rs9361767	A	G	149.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=1.067;DB;DP=8;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.572;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=-1.589;SOR=0.105;VQSLOD=1.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:54:178,0,54
+chr6	64151771	rs9294215	C	G	107.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.731;DB;DP=5;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.731;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.731;SOR=1.981;VQSLOD=6.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,4:5:25:136,0,25
+chr6	64153691	rs2076874	G	A	46.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.37;SOR=2.303;VQSLOD=8.47;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr6	64189643	rs58741217	T	TCAAA	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=0.693;VQSLOD=7.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	64190067	rs9443931	C	A	393.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;ClippingRankSum=-0.958;DB;DP=27;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.575;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.068;SOR=0.795;VQSLOD=5.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:422,0,388
+chr6	64190278	rs2622276	A	T	386.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;ClippingRankSum=-0.153;DB;DP=29;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.065;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-1.637;SOR=1.112;VQSLOD=2.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:415,0,464
+chr6	64190446	rs4299811	C	T	145.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.684;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.322;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.956;SOR=0.330;VQSLOD=6.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:8:87:174,0,87
+chr6	64190547	rs4557499	G	T	91.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SOR=2.833;VQSLOD=8.49;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
+chr6	64191578	rs10943822	A	T	30.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.248;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.248;POSITIVE_TRAIN_SITE;QD=3.42;ReadPosRankSum=0.248;SOR=0.223;VQSLOD=4.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:59:59,0,364
+chr6	64191586	rs10943823	T	C	73.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.382;DB;DP=11;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.566;POSITIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=0.715;SOR=0.132;VQSLOD=1.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:99:102,0,417
+chr6	64191949	rs2800052	C	T	95.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SOR=2.833;VQSLOD=7.66;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
+chr6	64209875	rs1744139	G	A	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.83;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	64209877	rs1779772	T	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.40;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	64221239	rs1744145	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64239405	rs1681942	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64258654	rs1744153	C	T	990.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=1.004;DB;DP=65;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.846;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.161;SOR=0.907;VQSLOD=3.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,33:65:99:1019,0,1066
+chr6	64289938	.	AT	A	167.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.045;DP=221;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=0.356;QD=0.76;ReadPosRankSum=-0.923;SOR=0.391;VQSLOD=0.248;culprit=DP	GT:AD:DP:GQ:PL	0/1:132,35:167:99:205,0,2502
+chr6	64322622	rs34430878	CT	C	638.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;ClippingRankSum=-0.777;DB;DP=34;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.255;QD=18.79;ReadPosRankSum=1.614;SOR=5.353;VQSLOD=3.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,28:29:60:676,60,0
+chr6	64322943	rs4583965	C	T	56.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.727;DB;DP=12;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=0.727;QD=4.74;ReadPosRankSum=0.727;SOR=1.609;VQSLOD=3.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:1,3:4:18:85,0,18
+chr6	64401952	rs200237690	CATT	C	919.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.006;DB;DP=77;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-2.870;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.436;SOR=1.105;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,26:71:99:957,0,2148
+chr6	64419024	.	CT	C	25.74	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=-2.457;DP=199;FS=4.601;MLEAC=1;MLEAF=0.500;MQ=57.02;MQ0=0;MQRankSum=0.154;QD=0.13;ReadPosRankSum=-0.940;SOR=0.158	GT:AD:DP:GQ:PL	0/1:142,25:167:63:63,0,2866
+chr6	64472270	rs4710257	A	C	1520.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;ClippingRankSum=-0.541;DB;DP=75;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.155;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-1.387;SOR=0.569;VQSLOD=4.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,43:75:99:1549,0,1031
+chr6	64498933	rs147210136	G	A	2218.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.180;ClippingRankSum=0.271;DB;DP=150;FS=9.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.467;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.950;SOR=0.286;VQSLOD=0.949;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,74:149:99:2247,0,2088
+chr6	64513363	.	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64523255	.	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64574392	rs10638627	C	CTT	140.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.729;DB;DP=11;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.361;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.361;SOR=0.892;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:178,0,138
+chr6	64574396	rs10645485	T	TTC	100.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=-0.361;DB;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.361;QD=11.19;ReadPosRankSum=-0.361;SOR=0.527;VQSLOD=4.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,178
+chr6	64577850	rs321500	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64627882	rs677250	T	C	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=7.65;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	64686503	rs9362331	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64694354	rs4710457	C	T	3197.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=1.756;DB;DP=194;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.786;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=2.117;SOR=0.546;VQSLOD=2.30;culprit=DP	GT:AD:DP:GQ:PL	0/1:92,101:193:99:3226,0,2888
+chr6	64694560	rs1482457	G	A	2447.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.451;ClippingRankSum=0.305;DB;DP=164;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.165;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.002;SOR=0.497;VQSLOD=2.46;culprit=DP	GT:AD:DP:GQ:PL	0/1:89,74:163:99:2476,0,2876
+chr6	64694620	rs1482456	T	C	1132.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.667;ClippingRankSum=0.220;DB;DP=67;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.663;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=2.755;SOR=1.516;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,32:67:99:1161,0,1169
+chr6	64708907	rs66502009	A	C	2569.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;ClippingRankSum=2.479;DB;DP=165;FS=4.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.156;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=1.406;SOR=1.162;VQSLOD=1.60;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,84:165:99:2598,0,2412
+chr6	64752796	rs10944301	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64840987	rs3013170	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=0.693;VQSLOD=7.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	64885636	rs4310034	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64949401	rs35507550	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64966049	rs2057165	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64968295	rs2057160	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	64995013	rs6917553	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65012918	rs9444712	T	C	558.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;ClippingRankSum=0.176;DB;DP=44;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.129;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.045;SOR=0.412;VQSLOD=2.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:587,0,721
+chr6	65013122	rs11753319	C	G	92.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.421;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.000;SOR=1.609;VQSLOD=6.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:8:99:121,0,142
+chr6	65013202	rs7739082	A	C	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.168;DB;DP=19;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.168;QD=1.04;ReadPosRankSum=0.056;SOR=0.495	GT:AD:DP:GQ:PL	0/1:16,3:19:48:48,0,530
+chr6	65021076	rs1922968	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65031098	rs1922975	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65037680	rs614395	G	C	38.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.322;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.517;POSITIVE_TRAIN_SITE;QD=4.85;ReadPosRankSum=-0.322;SOR=0.818;VQSLOD=4.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,3:8:67:67,0,135
+chr6	65051097	.	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65073876	rs671938	G	T	51.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SOR=2.303;VQSLOD=8.53;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
+chr6	65076921	.	A	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65084617	rs4518475	C	T	44.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.736;SOR=0.223;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:32:73,0,32
+chr6	65168481	rs35441646	C	CT	30.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.35;SOR=0.693;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
+chr6	65204065	rs13211837	C	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65210797	rs34848022	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65218097	rs9362916	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65229459	rs13202092	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65236845	rs4710276	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65245271	.	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65274426	rs140935331	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65302877	rs75420781	A	T	134.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=-0.198;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.198;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-1.495;SOR=1.609;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:61:163,0,61
+chr6	65302898	rs16895524	A	G	263.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;ClippingRankSum=1.381;DB;DP=13;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=0.533;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=0.817;SOR=1.179;VQSLOD=6.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,8:13:99:292,0,150
+chr6	65302915	rs11331907	GA	G	124.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.971;DB;DP=18;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=-1.678;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=2.208;SOR=0.693;VQSLOD=3.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:18:99:162,0,204
+chr6	65302987	rs139235690	ATATCT	A	997.73	VQSRTrancheINDEL99.00to99.90	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.287;DB;DP=46;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=-3.550;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=3.163;SOR=0.571;VQSLOD=-9.260e-02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:19,26:45:99:1035,0,709
+chr6	65303044	rs199667034	T	G	104.77	VQSRTrancheSNP99.90to100.00	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.183;ClippingRankSum=1.517;DB;DP=59;FS=83.060;MLEAC=1;MLEAF=0.500;MQ=52.39;MQ0=0;MQRankSum=0.300;QD=1.78;ReadPosRankSum=-1.257;SOR=5.992;VQSLOD=-1.136e+01;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,19:59:99:133,0,1230
+chr6	65303100	rs17404123	T	C	1344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.901;ClippingRankSum=-0.677;DB;DP=82;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=0;MQRankSum=-1.556;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=0.481;SOR=0.826;VQSLOD=2.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1373,0,1059
+chr6	65303381	rs17290119	T	C	46.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.736;SOR=1.179;VQSLOD=6.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
+chr6	65305972	rs11759796	G	A	55.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SOR=0.693;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
+chr6	65318362	rs9445030	C	T	61.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.43;SOR=1.179;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
+chr6	65341959	rs3028242	T	TATAAC	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=8.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	65365989	rs9445092	T	C	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=2.303;VQSLOD=9.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	65369802	rs148392797	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65379468	rs1338822	A	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=4.02;ReadPosRankSum=-0.736;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:32:40,0,32
+chr6	65423976	rs9452511	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65430160	rs9354068	C	T	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=5.09;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	65447951	rs70999169	A	AG	84.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SOR=1.179;VQSLOD=8.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
+chr6	65473673	rs60268597	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65510460	rs34778588	CT	C	514.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=-0.724;DB;DP=67;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-0.443;QD=7.68;ReadPosRankSum=1.520;SOR=1.167;VQSLOD=0.651;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,30:58:99:552,0,543
+chr6	65523111	rs9345532	A	C	67.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.322;DB;DP=8;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.920;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=-0.322;SOR=0.368;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,177
+chr6	65525121	rs1390272	C	T	133.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.922;DB;DP=16;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.488;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-1.139;SOR=0.412;VQSLOD=5.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,6:16:99:162,0,313
+chr6	65533004	rs34714059	A	G	223.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=-0.296;DB;DP=10;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.546;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=-0.296;SOR=1.609;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,7:10:91:252,0,91
+chr6	65545787	rs2172886	A	G	63.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.09;SOR=1.179;VQSLOD=7.94;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+chr6	65553444	rs2643788	A	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65569554	rs2146756	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65596759	rs7743515	G	A	2710.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SOR=2.895;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2739,226,0
+chr6	65611391	rs4710510	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65611814	rs57706332	T	C	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=2.303;VQSLOD=7.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	65611832	rs142709378	A	C	128.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.258;VQSLOD=6.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
+chr6	65611952	rs59518422	T	TATTA	1930.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SOR=3.767;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1968,132,0
+chr6	65612302	rs75634595	A	G	3301.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.382;ClippingRankSum=-0.220;DB;DP=215;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.451;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=2.299;SOR=0.598;VQSLOD=1.86;culprit=DP	GT:AD:DP:GQ:PL	0/1:108,107:215:99:3330,0,3121
+chr6	65622463	rs9294631	A	G	2159.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.924;ClippingRankSum=-0.947;DB;DP=134;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=1.365;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=2.546;SOR=0.693;VQSLOD=3.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:70,64:134:99:2188,0,2257
+chr6	65622662	rs9445437	G	C	2121.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.294;ClippingRankSum=0.507;DB;DP=143;FS=5.248;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.124;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.501;SOR=1.441;VQSLOD=1.80;culprit=DP	GT:AD:DP:GQ:PL	0/1:81,62:143:99:2150,0,2628
+chr6	65622769	rs74484316	A	G	456.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;ClippingRankSum=-1.231;DB;DP=21;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.336;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=1.007;SOR=1.508;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:485,0,229
+chr6	65622836	rs41516844	C	A	40.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=1.026;DB;DP=4;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-1.026;SOR=0.693;VQSLOD=6.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,76
+chr6	65632558	rs6455016	T	C	256.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=4.174;VQSLOD=6.56;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
+chr6	65678272	rs137904067	C	T	28.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.922;DB;DP=7;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.922;QD=4.11;ReadPosRankSum=0.922;SOR=0.223	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,186
+chr6	65715710	.	G	A	111.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=-1.159;DP=9;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.876;QD=12.42;ReadPosRankSum=-0.361;SOR=0.368;VQSLOD=4.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:140,0,137
+chr6	65721195	rs7751922	G	A	84.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=28.09;SOR=2.833;VQSLOD=7.19;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
+chr6	65831684	rs9363336	G	A	64.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.43;SOR=1.179;VQSLOD=8.84;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
+chr6	65995024	rs13214404	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	65999709	rs6455035	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66005609	rs34666704	AT	A	487.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.39;SOR=6.091;VQSLOD=6.41;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:525,60,0
+chr6	66005740	rs35045551	G	GA	1585.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=-0.710;DB;DP=159;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=0.316;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=1.276;SOR=0.921;VQSLOD=1.90;culprit=DP	GT:AD:DP:GQ:PL	0/1:79,74:153:99:1623,0,1557
+chr6	66005857	rs17411795	T	A	4088.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=-0.640;DB;DP=271;FS=2.014;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=1.167;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=2.177;SOR=0.759;VQSLOD=1.94;culprit=DP	GT:AD:DP:GQ:PL	0/1:136,134:270:99:4117,0,4192
+chr6	66005888	rs9342464	C	T	4205.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.627;ClippingRankSum=0.069;DB;DP=251;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.018;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.065;SOR=0.647;VQSLOD=1.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:126,125:251:99:4234,0,3830
+chr6	66005970	rs9345601	G	A	3380.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;ClippingRankSum=-0.936;DB;DP=213;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-1.449;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=1.107;SOR=0.516;VQSLOD=1.23;culprit=DP	GT:AD:DP:GQ:PL	0/1:103,109:212:99:3409,0,3103
+chr6	66006148	rs9342465	A	C	503.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.709;DB;DP=21;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.485;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.485;SOR=1.508;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:532,0,220
+chr6	66013183	.	G	A	123.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=-0.270;DP=20;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=21.81;MQ0=0;MQRankSum=-0.039;QD=6.19;ReadPosRankSum=0.656;SOR=0.368;VQSLOD=3.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,8:20:99:152,0,259
+chr6	66014572	rs75369872	A	G	25.75	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;QD=12.88;SOR=2.303	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
+chr6	66018514	rs117228350	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66036758	rs13209408	G	A	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	66045077	rs1502965	C	T	2159.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SOR=2.584;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2188,183,0
+chr6	66045118	rs1502964	T	C	1434.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SOR=6.091;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1463,126,0
+chr6	66053835	rs1502963	T	G	2324.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SOR=6.666;VQSLOD=7.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2353,168,0
+chr6	66063513	rs1936439	G	A	3064.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.245;ClippingRankSum=-0.619;DB;DP=169;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.296;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.339;SOR=0.465;VQSLOD=2.08;culprit=DP	GT:AD:DP:GQ:PL	0/1:65,104:169:99:3093,0,1991
+chr6	66063766	rs1936440	A	C	48.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=3;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-0.736;SOR=1.179;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
+chr6	66066936	rs9294638	G	T	172.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SOR=1.981;VQSLOD=6.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
+chr6	66067315	rs976727	A	C	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=0.693;VQSLOD=9.30;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	66080074	rs9342469	G	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66112409	rs974110	A	G	2596.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=-0.001;DB;DP=191;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.531;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=3.882;SOR=0.763;VQSLOD=1.48;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:102,89:191:99:2625,0,3119
+chr6	66115281	rs34154043	G	GAAA	3245.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.314;ClippingRankSum=1.320;DB;DP=225;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=0.881;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-2.390;SOR=0.705;VQSLOD=1.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:99,90:189:99:3283,0,3862
+chr6	66141229	.	T	C	20.78	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.39;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
+chr6	66160560	rs9354246	A	G	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	66201364	rs9363379	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66204945	rs12193967	G	A	2169.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=-0.093;DB;DP=128;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.577;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.481;SOR=0.652;VQSLOD=2.12;culprit=DP	GT:AD:DP:GQ:PL	0/1:58,70:128:99:2198,0,1773
+chr6	66288101	rs150888347	A	AAT	77.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=25.75;SOR=1.179;VQSLOD=7.22;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
+chr6	66336763	rs6903740	T	C	42.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SOR=2.303;VQSLOD=8.26;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
+chr6	66336907	rs71736895	CCTTT	C	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.85;SOR=2.303;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	66351345	rs6925080	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66375671	rs7757773	A	T	46.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.43;SOR=1.179;VQSLOD=7.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:74,9,0
+chr6	66379893	rs57880191	ACTC	A	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=2.303;VQSLOD=8.36;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	66379911	rs9283820	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.76;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	66394859	rs1490125	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66409784	rs2812776	A	G	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=31.37;SOR=2.303;VQSLOD=6.75;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	66409789	rs2814115	T	C	62.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SOR=2.303;VQSLOD=8.59;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
+chr6	66411331	rs1490130	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66417384	rs9294647	G	T	52.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SOR=0.693;VQSLOD=8.92;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
+chr6	66418352	rs1490129	T	C	233.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SOR=0.941;VQSLOD=6.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
+chr6	66418415	rs4609011	T	C	54.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SOR=0.693;VQSLOD=8.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
+chr6	66456318	rs2636129	T	C	49.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;SOR=2.303;VQSLOD=8.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
+chr6	66456442	rs12526256	C	T	92.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SOR=1.179;VQSLOD=8.78;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
+chr6	66471880	rs9453396	T	G	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66471897	rs9453397	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66471949	rs9445579	C	A	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SOR=0.693;VQSLOD=8.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	66524243	rs2802047	C	T	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66546565	rs4388276	G	A	48.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.303;VQSLOD=8.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr6	66547178	rs4392709	G	A	7412.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.53;SOR=0.857;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,208:208:99:7441,625,0
+chr6	66547322	rs9363455	T	G	5109.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=33.62;SOR=1.319;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,152:152:99:5138,456,0
+chr6	66568995	rs6931427	G	A	62.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.76;SOR=1.179;VQSLOD=8.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
+chr6	66596125	rs9283821	G	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66610269	rs9363483	A	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66710291	rs1484569	C	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66763069	rs1385225	A	G	57.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SOR=0.693;VQSLOD=9.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
+chr6	66763131	.	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66802808	rs4710310	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66803535	rs2881644	C	A	8655.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=238;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SOR=0.789;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,237:237:99:8684,713,0
+chr6	66803769	rs55951409	G	GGTTTCT	2785.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=27.53;SOR=0.960;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2823,189,0
+chr6	66804609	rs147166458	GACTC	G	322.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.179;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
+chr6	66804622	rs3925325	G	C	368.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=30.30;SOR=1.179;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:27:397,27,0
+chr6	66804958	rs3030466	C	CCT	52.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.35;SOR=2.303;VQSLOD=8.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
+chr6	66807446	rs7738469	T	C	53.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SOR=2.303;VQSLOD=7.44;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
+chr6	66818604	rs3846808	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66829961	rs11287287	AG	A	38.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.35;SOR=0.693;VQSLOD=8.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
+chr6	66836869	rs13217074	A	G	56.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SOR=0.693;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr6	66849936	rs866452	T	A	21.77	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.88;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
+chr6	66871532	rs138893096	C	CAAAG	53.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SOR=0.693;VQSLOD=8.24;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
diff --git a/simpleVCFClient.py b/simpleVCFClient.py
new file mode 100644
index 0000000..20915db
--- /dev/null
+++ b/simpleVCFClient.py
@@ -0,0 +1,222 @@
+#!/usr/bin/env python3
+
+# A simple client application that does the following:
+# - Loads a VCF file,
+# - For each entry in the file, performs a lookup to the Saphetor Variant API. 
+#   The call can be either in batch mode (the default and more efficient way, 
+#   sending a number of variants at a time), or one by one. 
+# - Extends the VCF description to include gene information for each entry that
+#   is retreived from the response received from the API.
+# - Saves the result, including the gene information (a comma-separated list of 
+#   gene symbols for each variant) in a new file in the VCF format.
+#   Note that if a row in the input VCF file contains more than one ALT field 
+#   entries, i.e. corresponds to more than one variants, we'll be storing one
+#   row per variant in the output VCF file.
+#
+# It uses the following modules:
+# pyVCF (http://pyvcf.readthedocs.io/en/latest/) 
+# variantapi.client (https://github.com/saphetor/variant-api-client-python)
+
+import argparse
+import json
+import logging
+import vcf
+import re
+import sys
+from sys import argv
+from variantapi.client import VariantAPIClient
+from vcf.parser import _Info as VcfInfo, field_counts as vcf_field_counts
+
+__author__ = 'stephanos-androutsellis'
+
+# Declare reference genome as a global variable
+_ref_genome = 1019
+
+# Declare the limit of variants we want to lookup in each batch request
+_batch_limit = 3 
+
+
+# A class to store variant lookup data:
+# - The record from the input VCF file
+# - The variant string
+# - The corresponding ALT value (convenient for multi-variant records)
+class Variant_lookup_data(object):
+    vcf_record = None
+    variant_string = ""
+    alt_value = ""
+
+    # The class constructor/initializer 
+    def __init__(self,vcf_record,variant_string,alt_value):
+        self.vcf_record=vcf_record
+        self.variant_string=variant_string
+        self.alt_value=alt_value
+
+
+def main(argv):
+	# Read and parse arguments
+	infile = ''
+	outfile = ''
+	do_batch_lookups = True
+	input_error = False
+
+	parser = argparse.ArgumentParser(description='Simple VCF Client application')
+	parser.add_argument('-i', help='Input VCF file', type=str, metavar='Input File', required=True)
+	parser.add_argument('-o', help='Output VCF file', type=str, metavar='Output File', required=True)
+	parser.add_argument('-k', help='Your key to the API', type=str, metavar='API Key', required=False)
+	parser.add_argument('-g', help='Reference genome either 1019 (default) or 1038', type=int, 
+		metavar='Reference Genome', required=False, default=1019)
+	parser.add_argument('-nb', help="Do not do batch requests", action='store_true')
+
+	args = parser.parse_args()
+	infile = args.i
+	outfile = args.o
+	api_key = args.k
+	ref_genome = args.g if args.g is not None else _ref_genome
+	do_batch_lookups = not args.nb
+
+	# Open and load vcf file into vfc reader object
+	print ("Reading input file ", infile)
+	vcf_reader = vcf.Reader(filename=infile, encoding='utf8')
+
+	# Add a new GENE info field in the metadata description, so that we may store such data for each record
+	vcf_reader.infos['GENE'] = VcfInfo( 'GENE', ".", 'String', 'Concatenated list of GENE sumbols',"","")
+	
+	# Prepare output for writing.
+	print ("Opening output file ", outfile)
+	vcf_writer = vcf.Writer(open(outfile, 'w'), vcf_reader, lineterminator='\n')
+
+	# Declare an array of Variant_lookup_data objects to hold data for executing the
+	# lookups and process its outcome.
+	variant_lookup_data_array = []
+
+	# A counter for the total number of rows processed thus far
+	total_counter = 0
+
+	# Initialize client connection to API
+	api = VariantAPIClient(api_key)
+	if (api is None):
+		print("Failed to connect to API")
+		sys.exit()
+
+	print("Start parsing input file")
+
+	# Iterate throught all the records read from the input VCF file
+	while True:
+		try: 
+			# Get next record (corresponds to a data row in the file)
+			vcf_record = next(vcf_reader)
+
+			# A vcf_record (i.e. row in the VCF file) may correspond to more than one variants, if it contains 
+			# more than one ALT values. We generate a Variant_lookup_data record for each variant,
+			# and add them to the variant_lookup_data_array. 
+			# Note: A reference to the same "vcf_record" object will be stored in each Variant_lookup_data record,
+			#       however the "alt" field will contain a different ALT value.
+			variant_lookup_data_from_vcf_record(vcf_record, variant_lookup_data_array)
+
+		except StopIteration as e:
+			# Reached end of input VCF file, no new vcf_record was read
+			vcf_record = None
+
+		# If we are performing batch lookups...
+		if (do_batch_lookups):
+			# Check if we have reached (or slightly crossed) the limit of variants we want for the batch request, or the end of the input file.
+			# Note: In this implementation we may cross the limit if the last vcf_record read contained more than one variants. This is OK.
+			if (len(variant_lookup_data_array) >= _batch_limit or vcf_record is None):
+				# Extract variant strings from array.
+				variant_string_array = [vld.variant_string for vld in variant_lookup_data_array]
+
+				# Execute batch lookup request
+				batch_data = api.batch_lookup(variant_string_array, ref_genome=ref_genome)
+		
+				# Process response, variant by variant
+				batch_counter = 0
+				for data in batch_data:
+					process_single_variant_response_data(variant_lookup_data_array[batch_counter], data, vcf_writer)
+					batch_counter += 1
+		
+				# Clear array
+				del variant_lookup_data_array[:]
+
+				if (vcf_record is None):
+					# Reached the end of the file, finish
+					break
+
+		# If we are performing individual lookups for each variant (which is not recommended for performance issues), 
+		# execute the lookup and process the outcome
+		else: 
+			if (vcf_record is not None):
+				# Execute lookup requests for each element in the array
+				for vld in variant_lookup_data_array:
+					data = api.lookup(vld.variant_string, ref_genome=ref_genome)
+					process_single_variant_response_data(vld, data, vcf_writer)
+
+				# Clear array
+				del variant_lookup_data_array[:]
+			else:
+				# Reached the end of the file, finish
+				break
+
+		total_counter += 1 
+		if (total_counter % 1000 == 0):
+			print ("Read ", total_counter, " rows")
+
+	print ("Finished reading ", total_counter, " rows, exiting")
+
+
+
+# Processes a vcf_record from the input VCF file, creates Variant_lookup_data objects for the variants
+# in the vcf_record, and appends them to the array variant_lookup_data_array that keeps such objects
+# for the current lookup. 
+# Input:
+#    vcf_record: The record read from the input VCF file
+#    variant_lookup_data_array: An array of Variant_lookup_data objects for the current lookup.
+# Output:
+#    None as such, but new elements are appended to the input array variant_lookup_data_array
+def variant_lookup_data_from_vcf_record(vcf_record, variant_lookup_data_array):
+	# Concatenate chromosome, position and reference, separated by ":" characters
+	variant_chromposref = vcf_record.CHROM + ":" + str(vcf_record.POS) + ":"
+	if (vcf_record.REF is not None):
+		variant_chromposref += str(vcf_record.REF)
+	variant_chromposref += ":"
+	
+	# For each ALT element, generate a new string and append to the array
+	if (vcf_record.ALT is not None):
+		for alt in vcf_record.ALT:
+			variant_string = variant_chromposref + str(alt)
+			variant_lookup_data = Variant_lookup_data(vcf_record,variant_string,alt)
+			variant_lookup_data_array.append(variant_lookup_data)
+	else:
+		variant_lookup_data = Variant_lookup_data(vcf_record,variant_chromposref,vcf_record.ALT)
+		variant_lookup_data_array.append(variant_lookup_data)
+
+
+# Processes a single variant description vcf_record and writes the resulting new record in the output VCF file
+# Input:
+#  variant_lookup_data: A Variant_lookup_data object corresponding to the variant being queried.
+#  response_data: The data received from the variant API for this specific record. Note that if the record contained more than one
+#        elements in the ALT field, and thus corresponded to more than one variants, we query the variant API once for each 
+#        variant. 
+#  vcf_writer: The output VCF file handler object
+# Output:
+#    None
+def process_single_variant_response_data(variant_lookup_data, response_data, vcf_writer):
+	# Check whether there is a field containing gene information in the response.
+	if ('genes' in response_data.keys() and response_data['genes']):
+		# Concatenate all gene symbols into a comma-separated string
+		gene_str = ""
+		for g in response_data['genes'][:-1]:
+			gene_str = gene_str + g['symbol'] + ","
+		gene_str = gene_str + response_data['genes'][-1]['symbol']
+
+		# Add gene entry in the INFO field, containing the string.
+		variant_lookup_data.vcf_record.INFO['GENE'] = gene_str
+
+	# Assign the correct ALT value to the vcf_record for this variant.
+	variant_lookup_data.vcf_record.ALT = [variant_lookup_data.alt_value]
+
+	# Write the record in the output vcf file.
+	vcf_writer.write_record(variant_lookup_data.vcf_record)
+
+
+if __name__ == '__main__':
+    main(argv)
diff --git a/variantapi/client.py b/variantapi/client.py
index d5707af..0219cea 100644
--- a/variantapi/client.py
+++ b/variantapi/client.py
@@ -3,7 +3,8 @@
 import requests
 from requests.exceptions import HTTPError, Timeout, ConnectionError, RequestException
 
-
+# Set DEBUG variable to affect ceertain parameters
+_debug = False
 
 class VariantApiException(Exception):
     ERROR_CODES = {
@@ -35,7 +36,7 @@ def __repr__(self):
 
 class VariantAPIClientBase(object):
 
-    _api_url = 'https://api.varsome.com'
+    _api_url = 'https://api.varsome.com' if _debug == False else 'https://dev-api.varsome.com'
     _accepted_methods = ('GET', 'POST')
 
     def __init__(self, api_key=None):