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inmarbl/ModDotPlot (press backspace or delete to remove)Hello,
I observed unexpected identity values in ModDotPlot (v0.9.8) that appear to depend on window position. To test, I
designed a controlled simulation.
Test Setup: 3 windows (w1, w2 and w3, 10 kb ...
justdx
- 2
- Opened 18 days ago
- #56
Hi Alex,
I installed the tool and when I tried to run it, the program cannot continue to run. When I input moddotplot -h, program
has stopped right here and No output was generated.
My installation steps ...
Yanghaoyan2024
- 4
- Opened on Oct 11, 2025
- #54
Hi Alex,
Great tool. I m trying to run moddotplot static on the one chromosome, which length is 496Mb. When I run the following:
nohup moddotplot static \
-w 2000 \
-f chr.fasta ...
yuanhelianyi
- 1
- Opened on Sep 8, 2025
- #53
ModDotPlot is still 0.9.1 on PyPI which is outdated. Can you please update it? Thanks!
PhoenixEmik
- 1
- Opened on Jun 13, 2025
- #50
Hi developers,
I am recently use ModDotPlot to visualize CHM13 chr1, and I found a curious thing.
moddotplot static -f CHM13#chr1.fa -o CHM13#chr1 -k 50 -id 90
Image
moddotplot static -f CHM13#chr1.fa ...
unavailable-2374
- 1
- Opened on May 5, 2025
- #49
Thank you for developing such excellent software. The following figure shows a chromosome with a length of 3.5Mb. I
found that the region around 2.5Mb is what I need, and I would like the graph to display ...
wjq1981
- 4
- Opened on Apr 29, 2025
- #48
When installing the project via pip install . or pip install moddotplot, the dependency svgutils is not automatically
installed. This results in a ModuleNotFoundError: No module named svgutils during ...
a927050047
- 1
- Opened on Apr 28, 2025
- #46
Hi,
Thanks for the program, it s working well. I d like to have two features in the interactive visualization which would
help with looking at tandem repeats. First is diagonal lines around the cursor ...
maickrau
- 1
- Opened on Feb 4, 2025
- #41
Dear developers,
thank you for this amazing tool. I have an issue that I am not completely sure how to describe.
I ran compare-only mode on fastas with three sequences inside. Sometimes the output is ...
Liverworks
- Opened on Nov 14, 2024
- #39
I tried to install moddotplot on my M2 Mac Air which has Python 3.12 from home-brew. The env failed because PIL requires
py = 3.7 and 3.11. Updating PIL to the Pillow fork let me install and I was able ...
skoren
- 2
- Opened on Sep 20, 2024
- #36
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