diff --git a/pom.xml b/pom.xml
index ad58a59..3581b0e 100644
--- a/pom.xml
+++ b/pom.xml
@@ -24,7 +24,7 @@
     <dependency>
       <groupId>com.github.samtools</groupId>
       <artifactId>htsjdk</artifactId>
-      <version>2.9.1-13-g9d343e7-SNAPSHOT</version>
+      <version>3.0.1</version>
     </dependency>
     <dependency>
       <groupId>net.sf.samtools</groupId>