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Commits on Jul 27, 2023

• update readme (#232)

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  sage-wright

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• update readme (#231)

  sage-wright

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Commits on Apr 21, 2023

• Updated description (#230)

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  Emma Doughty

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Commits on Apr 14, 2023

• update version task to "PHBG v1.3.0" (#229)

  kapsakcj

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• Amended srst2_gene_max_mismatch default value (#228)

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  emmadoughty

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Commits on Apr 13, 2023

• Incorporate vibrio characterisation with srst2 into TheiaProk workflows (#216)

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Commits on Mar 28, 2023

• Merge pull request #223 from theiagen/smw-version-update

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  kapsakcj

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  384c1a0

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• update version

  sage-wright

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• Revert "add ordered=t"

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  sage-wright

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• Revert "update md5sum"

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  sage-wright

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• Revert "Update version to v1.2.0"

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  sage-wright

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  dc1f1bc

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• Merge branch 'smw-version-update' of https://github.com/theiagen/public_health_bacterial_genomics into smw-version-update

  sage-wright

  committed
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• Update version to v1.2.0

  sage-wright

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• update md5sum

  sage-wright

  committed
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• add ordered=t

  sage-wright

  committed
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• Merge pull request #224 from theiagen/im-patch

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  michellescribner

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• add missing tbprofiler optional outputs to export_taxon_tables inputs

  cimendes

  committed
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Commits on Mar 27, 2023

• Update version to v1.2.0

  sage-wright

  authored
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• Add comma (#222)

  sage-wright

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Commits on Mar 23, 2023

• Merge pull request #220 from theiagen/kgl-readme-update

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  kapsakcj

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Commits on Mar 22, 2023

• Update README.md

  kevinlibuit

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Commits on Mar 16, 2023

• Adds Staph aureus subwf (#213)

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  kapsakcj

  and

  cimendes

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• New output columns from TBProfiler Task (#217)

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  cimendes

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Commits on Feb 27, 2023

• Add neisseria subwf: ngmaster and meningotype (#211)

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  kapsakcj

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  cimendes

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Commits on Feb 14, 2023

• Merge pull request #209 from theiagen/cjk-mlst-profile

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  sage-wright

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Commits on Feb 9, 2023

• update CI for ts_mlst; but now amrfinderplus CI is failing for some reason?

  kapsakcj

  committed
  9e5f2cc

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• update CI

  kapsakcj

  committed
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• added pytest/miniwdl check for new ts_mlst output allelic_profile

  kapsakcj

  committed
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• added new ts_mlst output "ts_mlst_allelic_profile" to export_taxon_tables task as well as both PE and SE TheiaProk workflows

  kapsakcj

  committed
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• mlst task changes: new output string for allelic_profile. added helpful comments. added double quotes for safety. tested fine with miniwdl

  kapsakcj

  committed
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Commits on Jan 31, 2023

• reorder snp matrix (#198)

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  sage-wright

  authored
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• Fja readlength dev (#201)

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  3 peopleauthored
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• add optional task for shigeifinder w/ reads as input; update default docker for both shigeifinder & shigatyper (#202)

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  kapsakcj

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Commits on Jan 24, 2023

• Merge pull request #204 from theiagen/kgl-klebfinder-dev

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  michellescribner

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Commits on Jan 23, 2023

• update md5sums

  michellescribner

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