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update stxtyper to 1.0.45 (#1004)
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docs/assets/tables/all_inputs.tsv

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@@ -1510,8 +1510,8 @@ merlin_magic stxtyper_cpu Int Internal component, do not modify 1 Optional Theia
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merlin_magic stxtyper_cpu Int Number of CPUs to allocate to the task 1 Optional TheiaProk_FASTA, TheiaProk_Illumina_PE, TheiaProk_Illumina_SE, TheiaProk_ONT runtime
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merlin_magic stxtyper_disk_size Int Internal component, do not modify 50 Optional TheiaEuk_Illumina_PE, TheiaEuk_ONT general
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merlin_magic stxtyper_disk_size Int Amount of storage (in GB) to allocate to the task 50 Optional TheiaProk_FASTA, TheiaProk_Illumina_PE, TheiaProk_Illumina_SE, TheiaProk_ONT runtime
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merlin_magic stxtyper_docker_image String Internal component, do not modify us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.42 Optional TheiaEuk_Illumina_PE, TheiaEuk_ONT general
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merlin_magic stxtyper_docker_image String The Docker container to use for the task us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.42 Optional TheiaProk_FASTA, TheiaProk_Illumina_PE, TheiaProk_Illumina_SE, TheiaProk_ONT docker
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merlin_magic stxtyper_docker_image String Internal component, do not modify us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.45 Optional TheiaEuk_Illumina_PE, TheiaEuk_ONT general
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merlin_magic stxtyper_docker_image String The Docker container to use for the task us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.45 Optional TheiaProk_FASTA, TheiaProk_Illumina_PE, TheiaProk_Illumina_SE, TheiaProk_ONT docker
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merlin_magic stxtyper_enable_debug Boolean Internal component, do not modify False Optional TheiaEuk_Illumina_PE, TheiaEuk_ONT general
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merlin_magic stxtyper_enable_debug Boolean When enabled, additional messages are printed and files in $TMPDIR are not removed after running False Optional TheiaProk_FASTA, TheiaProk_Illumina_PE, TheiaProk_Illumina_SE, TheiaProk_ONT general
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merlin_magic stxtyper_memory Int Internal component, do not modify 4 Optional TheiaEuk_Illumina_PE, TheiaEuk_ONT general

tasks/species_typing/escherichia_shigella/task_stxtyper.wdl

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@@ -5,7 +5,7 @@ task stxtyper {
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File assembly
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String samplename
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Boolean enable_debugging = false # Additional messages are printed and files in $TMPDIR are not removed after running
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String docker = "us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.42"
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String docker = "us-docker.pkg.dev/general-theiagen/staphb/stxtyper:1.0.45"
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Int disk_size = 50
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Int cpu = 1
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Int memory = 4

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