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Chickens

README.md

Chickens: Code to analyze chicken data

  • Frequency_change_rrBlup_reverse_inset_EW1.Rmd: Code to calculate allele frequencies, estimate effects, and run analysis on chicken data.

  • Frequency_change_rrBlup_reverse_inset_EW1.html: HTML-readable code.

  • Frequency_change_rrBlup_outliers_removed_EW1.Rmd: Code to calculate allele frequencies, estimate effects, and run analysis on chicken data, with outliers removed.

  • Frequency_change_rrBlup_outliers_removed_EW1.html: HTML-readable code.

  • ld_calc_chicken.r: Code to calculate LD decay in chicken data.