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Feature/mynn sfc submodule (#3052) // Update WM user guide for AQM updates (#3071) // Sync WW3 develop to dev/ufs-weather-model (#3091) (#3052)
* UFSWM - Switch mynn sfc scheme to submodule * UFSWM - Update WM user guide ahead of the AQM release; fix doc ci fail * UFSWM - Sync WW3 develop to dev/ufs-weather-model * UFSATM - Updates in suite definitions files and ccpp preconfig file to work with mynn sfc scheme submodule * ccpp-physics - switch mynn sfc scheme to submodule * WW3 - Sync develop as of 2-12-2026 to dev/ufs-weather-model
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‎.readthedocs.yaml‎

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# Required
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version: 2
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build:
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os: ubuntu-20.04
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tools:
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python: "3.9"
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build:
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os: ubuntu-22.04
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tools:
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python: "3.12"
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jobs:
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post_create_environment:
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- python -m pip install --upgrade "pip" "setuptools<81"
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# Build documentation in the docs/ directory with Sphinx
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sphinx:

‎UFSATM‎

Submodule UFSATM updated 23 files

‎WW3‎

Submodule WW3 updated 44 files

‎doc/UsersGuide/requirements.in‎

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sphinx==7.4.7
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sphinx_rtd_theme
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sphinxcontrib-bibtex
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requests==2.32.2
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sphinx>=8.0.0
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sphinx_rtd_theme>=3.0.0
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sphinxcontrib-bibtex>=2.6.4
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requests>=2.32.2
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setuptools<81.0.0

‎doc/UsersGuide/requirements.txt‎

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# This file is autogenerated by pip-compile with Python 3.13
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# by the following command:
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#
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# pip-compile requirements.in
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# pip-compile --allow-unsafe --strip-extras requirements.in
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#
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alabaster==0.7.16
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# via sphinx
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# pybtex
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snowballstemmer==2.2.0
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# via sphinx
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sphinx==7.4.7
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sphinx==8.0.2
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# via
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# -r requirements.in
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# sphinx-rtd-theme
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# sphinxcontrib-bibtex
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# sphinxcontrib-jquery
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sphinx-rtd-theme==2.0.0
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sphinx-rtd-theme==3.1.0
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# via -r requirements.in
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sphinxcontrib-applehelp==1.0.8
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# via sphinx
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sphinxcontrib-bibtex==2.6.2
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sphinxcontrib-bibtex==2.6.4
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# via -r requirements.in
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sphinxcontrib-devhelp==1.0.6
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# via sphinx
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# via sphinx
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urllib3==2.2.2
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# via requests
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# The following packages are considered to be unsafe in a requirements file:
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setuptools==80.10.2
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# via
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# -r requirements.in
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# sphinxcontrib-bibtex

‎doc/UsersGuide/source/Glossary.rst‎

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The `Air Quality Model <https://github.com/NOAA-EMC/AQM>`_ (AQM) is a UFS Application that dynamically couples the Community Multiscale Air Quality (:term:`CMAQ`) model with the UFS Weather Model through the :term:`NUOPC` Layer to simulate temporal and spatial variations of atmospheric compositions (e.g., ozone and aerosol compositions). The CMAQ, treated as a column chemistry model, updates concentrations of chemical species (e.g., ozone and aerosol compositions) at each integration time step. The transport terms (e.g., :term:`advection` and diffusion) of all chemical species are handled by the UFS Weather Model as :term:`tracers<tracer>`.
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CCPP
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The `Common Community Physics Package <https://dtcenter.org/community-code/common-community-physics-package-ccpp>`_ is a forecast-model agnostic, vetted collection of code containing atmospheric physical parameterizations and suites of parameterizations for use in Numerical Weather Prediction (:term:`NWP`) along with a framework that connects the physics to the host forecast model.
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The `Common Community Physics Package <https://dtcenter.org/software-tools/common-community-physics-package-ccpp>`_ is a forecast-model agnostic, vetted collection of code containing atmospheric physical parameterizations and suites of parameterizations for use in Numerical Weather Prediction (:term:`NWP`) along with a framework that connects the physics to the host forecast model.
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CCPP-Framework
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The infrastructure that connects physics schemes with a host model; also refers to a software

‎doc/UsersGuide/source/InputsOutputs.rst‎

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* - ATMAERO
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- :term:`ATM` coupled to :term:`GOCART`
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* - ATMAQ
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- :term:`ATM` coupled to :term:`CMAQ`
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- :term:`ATM` coupled to :term:`AQM`
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* - ATML
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- :term:`ATM` coupled to :term:`NOAHMP`
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* - ATMF
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.. note::
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Users can find atmospheric forcing files for use with the Noah-MP land component (LND) in the `Land Data Assimilation (DA) data bucket <https://registry.opendata.aws/noaa-ufs-land-da/>`_. These files provide atmospheric forcing data related to precipitation, solar radiation, longwave radiation, temperature, pressure, winds, humidity, topography, and mesh data. Forcing files for the land component configuration come from the Global Soil Wetness Project Phase 3 (`GSWP3 <https://hydro.iis.u-tokyo.ac.jp/GSWP3/>`_) dataset.
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Users can find atmospheric forcing files for use with the Noah-MP land component (LND) in the `Land Data Assimilation (DA) data bucket <https://registry.opendata.aws/noaa-ufs-land-da/>`_. These files provide atmospheric forcing data related to precipitation, solar radiation, longwave radiation, temperature, pressure, winds, humidity, topography, and mesh data. Forcing files for the land component configuration come from the Global Soil Wetness Project Phase 3 (`GSWP3 <https://www.isimip.org/gettingstarted/input-data-bias-adjustment/details/4/>`_) dataset.
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.. code-block:: console
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.. _aqm-in:
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--------------
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AQM (CMAQ)
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UFS AQM
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--------------
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.. _aqm-fix-files:
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* - Filename
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- Description
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* - AE_cb6r3_ae6_aq.nml
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- AE Matrix NML
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* - GC_cb6r3_ae6_aq.nml
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- GC Matrix NML
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* - NR_cb6r3_ae6_aq.nml
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- NR Matrix NML
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* - AE_cb6r5_ae7_aq.nml
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- AE Matrix NML - Specifies chemical species, emissions mapping, and related settings for CMAQ's CB6r5 (Revision 5 of the Carbon Bond 6 Mechanism) chemical mechanism.
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* - GC_cb6r5_ae7_aq.nml
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- GC Matrix NML - Configures CMAQ's gas-phase chemistry controls.
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* - NR_cb6r5_ae7_aq.nml
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- NR Matrix NML - Non-reactive, gas-phase chemical species configuration for CMAQ.
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* - Species_Table_TR_0.nml
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- TR Matrix NML
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* - CSQY_DATA_cb6r3_ae6_aq
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- CSQY Data
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- TR Matrix NML - CMAQ species transport definitions. Empty in the UFS as CMAQ is used as a column model with tracer transport using FV3.
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* - CSQY_DATA_cb6r5_ae7_aq
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- CSQY Data - CMAQ's chemical stoichiometric yield data table used by the solver for numerical calculations.
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* - PHOT_OPTICS.dat
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- Optics Data
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* - omi_cmaq_2015_361X179.dat
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- OMI data
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- OMI data - Ozone Monitoring Instrument (OMI) profile mappings used in establishing CMAQ boundary conditions.
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* - NEXUS/NEXUS_Expt.nc
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- Emissions File
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* - BEIS_RRFScmaq_C775.ncf
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- File Emissions File
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The most recent AQM input data files can be found in the `Weather Model S3 bucket <https://noaa-ufs-regtests-pds.s3.amazonaws.com/index.html>`_ in the input-data-202XXXXX/AQM directory for the most recent date. Below are the data subdirectories that exist in ``input-data-202XXXXX/AQM/v8``.
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* - ``fix``
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- Fix files are static, climatological, and topographical datasets required for model initialization and running. These files include terrain, land use, vegetation, and soil data.
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* - ``NEXUS``
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- "NEXUS" (NOAA Emission and eXchange Unified System) files are specialized input files used for air quality modeling to incorporate pollutant emissions data.
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* - ``INPUT``
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- This directory contains pre-processing, initial conditions, grid-dependent, and namelist files.
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.. _lnd-in:
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--------------

‎tests/logs/OpnReqTests_control_p8_ursa.log‎

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Sat Feb 7 21:20:09 UTC 2026
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Fri Feb 13 23:31:37 UTC 2026
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Start Operation Requirement Test
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/bit_base_bit_base
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/bit_base_bit_base
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Checking test bit_base results ....
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Moving baseline bit_base files ....
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Moving sfcf000.nc .........OK
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Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
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Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
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0: The total amount of wall time = 143.654868
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0: The maximum resident set size (KB) = 2603116
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0: The total amount of wall time = 733.614236
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0: The maximum resident set size (KB) = 2602292
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Test bit_base PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/dbg_base_dbg_base
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/dbg_base_dbg_base
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Checking test dbg_base results ....
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Moving baseline dbg_base files ....
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Moving sfcf000.nc .........OK
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Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
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Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
108108

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0: The total amount of wall time = 1212.053972
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0: The total amount of wall time = 1207.041882
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0: The maximum resident set size (KB) = 2533752
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Test dbg_base PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/dcp_dcp
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/dcp_dcp
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Checking test dcp results ....
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Comparing sfcf000.nc .....USING NCCMP......OK
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Comparing sfcf021.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
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Test dcp PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/mpi_mpi
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/mpi_mpi
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Checking test mpi results ....
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Comparing sfcf000.nc .....USING NCCMP......OK
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Comparing sfcf021.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/rst_rst
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/rst_rst
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Checking test rst results ....
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Comparing sfcf000.nc .....USING NCCMP......OK
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Comparing sfcf021.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
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Test rst PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/std_base_std_base
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/std_base_std_base
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Checking test std_base results ....
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Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
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Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK
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0: The total amount of wall time = 514.078367
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Test std_base PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_947340/thr_thr
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937680/thr_thr
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Checking test thr results ....
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Comparing sfcf000.nc .....USING NCCMP......OK
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Comparing sfcf021.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
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Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK
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0: The total amount of wall time = 114.499191
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0: The total amount of wall time = 386.290688
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0: The maximum resident set size (KB) = 2506028
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Test thr PASS
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OPERATION REQUIREMENT TEST WAS SUCCESSFUL
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Sat Feb 7 22:32:57 UTC 2026
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Elapsed time: 01h:12m:48s. Have a nice day!
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Sat Feb 14 02:29:01 UTC 2026
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Elapsed time: 02h:57m:25s. Have a nice day!

‎tests/logs/OpnReqTests_cpld_control_nowave_noaero_p8_ursa.log‎

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Start Operation Requirement Test
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_1012320/dbg_base_dbg_base
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_intel
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working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937679/dbg_base_dbg_base
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Checking test dbg_base results ....
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Moving baseline dbg_base files ....
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Moving sfcf021.tile1.nc .........OK
@@ -66,14 +66,14 @@ Moving baseline dbg_base files ....
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Moving RESTART/iced.2021-03-23-21600.nc .........OK
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Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
6868

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0: The total amount of wall time = 3003.903806
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0: The total amount of wall time = 2968.505908
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0: The maximum resident set size (KB) = 3026668
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Test dbg_base PASS
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baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_intel
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working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_1012320/rst_rst
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baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_intel
76+
working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937679/rst_rst
7777
Checking test rst results ....
7878
Comparing sfcf021.tile1.nc .....USING NCCMP......OK
7979
Comparing sfcf021.tile2.nc .....USING NCCMP......OK
@@ -135,14 +135,14 @@ Checking test rst results ....
135135
Comparing RESTART/iced.2021-03-23-21600.nc .....USING NCCMP......OK
136136
Comparing RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .....USING NCCMP......OK
137137

138-
0: The total amount of wall time = 283.879319
139-
0: The maximum resident set size (KB) = 2993624
138+
0: The total amount of wall time = 282.957457
139+
0: The maximum resident set size (KB) = 2996672
140140

141141
Test rst PASS
142142

143143

144-
baseline dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-stmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_intel
145-
working dir = /scratch3/NCEPDEV/stmp/Fernando.Andrade-maldonado/ORT-ptmp/Fernando.Andrade-maldonado/FV3_OPNREQ_TEST/opnReqTest_1012320/std_base_std_base
144+
baseline dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-stmp/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_intel
145+
working dir = /scratch3/NCEPDEV/stmp/role.epic/ORT-ptmp/role.epic/FV3_OPNREQ_TEST/opnReqTest_1937679/std_base_std_base
146146
Checking test std_base results ....
147147
Moving baseline std_base files ....
148148
Moving sfcf021.tile1.nc .........OK
@@ -205,11 +205,11 @@ Moving baseline std_base files ....
205205
Moving RESTART/iced.2021-03-23-21600.nc .........OK
206206
Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
207207

208-
0: The total amount of wall time = 301.285978
209-
0: The maximum resident set size (KB) = 3004916
208+
0: The total amount of wall time = 1539.591764
209+
0: The maximum resident set size (KB) = 3005772
210210

211211
Test std_base PASS
212212

213213
OPERATION REQUIREMENT TEST WAS SUCCESSFUL
214-
Sat Feb 7 22:43:10 UTC 2026
215-
Elapsed time: 01h:21m:59s. Have a nice day!
214+
Sat Feb 14 02:16:51 UTC 2026
215+
Elapsed time: 02h:45m:15s. Have a nice day!

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