Merge pull request datacarpentry#348 from marcodallavecchia/add_further_reading_section

Add further reading section

Author: marcodallavecchia

config.yaml

@@ -71,6 +71,11 @@ episodes:
 
 # Information for Learners
 learners: 
+- prereqs.md
+- discuss.md
+- reference.md
+- further-reading.md
+- edge-detection.md
 
 # Information for Instructors
 instructors: 

episodes/09-challenges.md

@@ -246,3 +246,12 @@ def count_colonies_enhanced(image_filename, sigma=1.0, min_colony_size=10, conne
 - These methods are useful for many scientific problems, especially those involving morphometrics.
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
+
+
+:::::::::::::::::::::::::::::::::::::::: discussion
+
+## Where to go from here?
+
+Take a look at our [curated list of resources](further-reading.md) for further publicly available courses, resources and scientific literature around image processing and more.
+
+::::::::::::::::::::::::::::::::::::::::::::::::::

learners/further-reading.md

@@ -0,0 +1,29 @@
+---
+title: Further Reading
+permalink: /reading/
+---
+
+## Where to go from here
+
+- [Scikit-image YouTube tutorials](https://www.youtube.com/playlist?list=PLBKcU7Ik-ir9Fi_hM_A6_U2UTpm7ACUtl)
+- [Principles of Scientific Imaging](https://imagej.net/imaging/principles)
+- [Data Handling and Management Training](https://carpentries-incubator.github.io/Data-Management-Training/)
+- [Introduction to Bioimage Analysis by Pete Bankhead](https://bioimagebook.github.io/index.html)
+- [Bio-image Analysis Notebooks by Robert Haase](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html)
+- [Introduction to artificial neural networks in Python](https://carpentries-incubator.github.io/machine-learning-neural-python/index.html)
+- [Building Better Research Software](https://carpentries-incubator.github.io/better-research-software/)
+
+## Where to find more help
+
+- [Image.sc Forum](https://image.sc/)
+- [NFDI4BioImage Training Materials collection](https://nfdi4bioimage.github.io/training/readme.html)
+- [Curated list of image analysis resources by EPFL Center for Imaging](https://github.com/EPFL-Center-for-Imaging/awesome-scientific-image-analysis)
+
+## Scientific Literature
+
+- [Digital Image Processing](https://www.imageprocessingplace.com), Textbook by Rafael C. Gonzalez and Richard E. Woods
+- [Checklist for publishing images and analyses ](https://www.nature.com/articles/s41592-023-01987-9)
+- [REMBI: Recommended Metadata for Biological Images](https://www.nature.com/articles/s41592-021-01166-8)
+- ["Twenty questions": a schema for a set of questions to guide analyses](https://www.nature.com/articles/s41592-023-01919-7)
+- [From cells to pixels: A decision tree for designing bioimage analysis pipelines](https://onlinelibrary.wiley.com/doi/10.1111/jmi.70021)
+

learners/reference.md

@@ -1,5 +1,5 @@
 ---
-title: 'Reference'
+title: 'Glossary'
 ---
 
 ## Glossary