usegalaxy-eu-tools/eirene.yaml.lock at master · usegalaxy-eu/usegalaxy-eu-tools · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: recetox_aplcms_generate_feature_table
  owner: recetox
  revisions:
  - 6ba3526237e0
  - 702a849c1e0e
  - 89178a72388a
  - b3413f335327
  - b341cfd4baf8
  - e7305ba0dd38
  - ebca18e223bf
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_recover_weaker_signals
  owner: recetox
  revisions:
  - 24278c6b6d1c
  - 99d118321d5f
  - c3d4b82c7e5d
  - d7f5878a98c3
  - e0536ff73f36
  - e2cb970d99dd
  - f92b1b64da93
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_correct_time
  owner: recetox
  revisions:
  - 02c772a49998
  - 1574b8a29e6f
  - 474d2bcb22e4
  - 501a232f3cd5
  - 51332c2520c7
  - 9064aecc78a7
  - a82db010c53e
  - bd1956f4c2aa
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_compute_clusters
  owner: recetox
  revisions:
  - 149b9cc7499b
  - 15aae2bfa67d
  - 18ec7635bac6
  - 59c393d35e0e
  - 60a09c4fa7a0
  - b9b19a74ac01
  - f3a18e020cdd
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_remove_noise
  owner: recetox
  revisions:
  - 156293ea9f88
  - 7acd11ddc061
  - 8fb5e458831f
  - b5a1f35abd8a
  - d90187b0f247
  - ea0758b41473
  - ffbabefbd2e2
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_merge_known_table
  owner: recetox
  revisions:
  - 04892b463957
  - 17a48d0a80f4
  - 396a3b1eafd0
  - b7c8a44b9cc1
  - cf061712a184
  - dd7bbc2b99d1
  - fb95cb4a6b9b
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_compute_template
  owner: recetox
  revisions:
  - 134be5abb208
  - 481d769e2f7a
  - 4963811b6dec
  - 50b9918aeff2
  - 51e37adf988f
  - dfebc82ba1f0
  - f8c4db95eec3
  tool_panel_section_label: Metabolomics
- name: recetox_aplcms_align_features
  owner: recetox
  revisions:
  - 1a01ffa85adc
  - 2d13fcae8b84
  - 79ad928a0dae
  - 7b42ee54d757
  - c53a97599181
  - d5c638b72ce4
  - ec196e27a61a
  tool_panel_section_label: Metabolomics
- name: rmassbank
  owner: recetox
  revisions:
  - 0b28816c1c2c
  - 5a6bb93ec656
  - 60c2da112839
  tool_panel_section_label: Metabolomics
- name: biotransformer
  owner: recetox
  revisions:
  - 0b86600b715e
  - 0f1b15d51801
  - 200c5c982dba
  - 6cd2a9e6ac49
  - 90dc951da294
  - e5fcba090b10
  tool_panel_section_label: Metabolomics
- name: msmetaenhancer
  owner: recetox
  revisions:
  - 2ada1099f42e
  - 3b402610c6dc
  - 3e2cb0bc6959
  - 560053b805d2
  - 646ef66527da
  - 90745ecc5e9f
  - a6af1e124e06
  - b5467dead5b1
  tool_panel_section_label: Metabolomics
- name: riassigner
  owner: recetox
  revisions:
  - 4abc4359b978
  - 4e47a0fa9287
  - 79818ce5a8bf
  - 8c5e65adf694
  - 984d5fa7acf5
  - 9b2fe4c49ecb
  - af25aa61c611
  - c702620c22b1
  tool_panel_section_label: Metabolomics
- name: ramclustr
  owner: recetox
  revisions:
  - 050cfef6ba65
  - 09cabbc3d12d
  - 2d94da58904b
  - 2ec9253a647e
  - 9b716db0a786
  - d70dd1d6ac4d
  - da7722f665f4
  - f52181a205d3
  tool_panel_section_label: Metabolomics
- name: ramclustr_define_experiment
  owner: recetox
  revisions:
  - 25625114618e
  - 5f2b58dadb39
  - ef3cbcdf5f5d
  tool_panel_section_label: Metabolomics
- name: recetox_xmsannotator_advanced
  owner: recetox
  revisions:
  - 2c6fa447f6a0
  - 6b5dec818827
  tool_panel_section_label: Metabolomics
- name: matchms_convert
  owner: recetox
  revisions:
  - 50836782d36f
  - 5611c132f607
  - 692471e62c68
  - 9e83636da9d3
  - b9cc12600553
  - d4609fbf8ca3
  - ece330bc4882
  - fb09ed49c70e
  tool_panel_section_label: Metabolomics
- name: matchms_add_key
  owner: recetox
  revisions:
  - 4e8a6d6f0e6a
  - 51da674b945d
  - 7c5b86026e57
  - a5d41764722d
  - d5a50ec6035d
  - d88b20d27caa
  tool_panel_section_label: Metabolomics
- name: matchms_remove_key
  owner: recetox
  revisions:
  - 0676c9aeaeac
  - 19367db5cf3c
  - 51ac25987e83
  - ef233c08112e
  - fbdb2ae524df
  tool_panel_section_label: Metabolomics
- name: matchms_filtering
  owner: recetox
  revisions:
  - 07cac38cbd29
  - 11431418a707
  - 13de8005adba
  - 357df6c47d92
  - 3f7790b73906
  - 83c4b4359ac4
  - a177ac3c752c
  - a4661ff81aa4
  - c5076cc15e8c
  - ca5a8db023e1
  tool_panel_section_label: Metabolomics
- name: matchms_remove_spectra
  owner: recetox
  revisions:
  - c24ebd41dd53
  - c7be8e58a6af
  - d50ce2f51fc0
  tool_panel_section_label: Metabolomics
- name: matchms_fingerprint_similarity
  owner: recetox
  revisions:
  - 1ffbd537984f
  - 84af792d3a78
  - 9f846954928f
  - ad9d2d1b2b8d
  - cdb41d95648c
  - df85b26201d1
  - fd890f162ce6
  tool_panel_section_label: Metabolomics
- name: matchms_formatter
  owner: recetox
  revisions:
  - 1b09315a3f87
  - 3dad3f53402f
  - 402620029a7a
  - 48ade5cc847f
  - 5fa29e292e12
  - 6501d0287dcd
  - 86a45ba3d3f2
  - a5a5b147da70
  - ae45992f969e
  - afc881c21a62
  tool_panel_section_label: Metabolomics
- name: matchms_metadata_export
  owner: recetox
  revisions:
  - 7504a8f93699
  - 786df5cf7dec
  - 7e2066111683
  - 811104b25490
  - 86727e1d0866
  - 8832425b1ff6
  - cbadbec49b5d
  - dd49ef90297c
  - f04610d25411
  tool_panel_section_label: Metabolomics
- name: matchms_metadata_match
  owner: recetox
  revisions:
  - 03bc9b7f40f6
  - 330b0dfae8da
  - 5c379988b7ea
  - 651cf2ca74b2
  - 844d32c59314
  - 91b4b0c9a384
  - b5b360897004
  - ec81ec7cea2e
  tool_panel_section_label: Metabolomics
- name: matchms_networking
  owner: recetox
  revisions:
  - 7a8743876c60
  - 8147d93d372d
  - 9982b85ff4e7
  - ab8a33c370f5
  - c42b977ec884
  - d8e937f335b8
  - f04b378325e5
  tool_panel_section_label: Metabolomics
- name: matchms_similarity
  owner: recetox
  revisions:
  - 872d8040f713
  - e5010b19d64d
  tool_panel_section_label: Metabolomics
- name: matchms_spectral_similarity
  owner: recetox
  revisions:
  - 26c92af1bd28
  - 32a8826ed367
  - 3f96c93f8566
  - 5fae85d4a69a
  - 7ba589b01dbc
  - 9ff95a1a2705
  - b2c7b7705734
  tool_panel_section_label: Metabolomics
- name: matchms_split
  owner: recetox
  revisions:
  - 05b91d5045ce
  - 0cf68b536cd1
  - 446fddefcee7
  - 6864944b00fd
  - 7676700d7c4f
  - 97be845e45c2
  - a7162e5281c1
  - ea6c5636c0cf
  - fc1bc38ede0b
  tool_panel_section_label: Metabolomics
- name: matchms_subsetting
  owner: recetox
  revisions:
  - 5bbd1a8404f5
  - 8f5a1e44b15c
  - a598091029ad
  - aa2e912f9dc2
  - cab0e4dcf372
  - d11b27e59dfa
  tool_panel_section_label: Metabolomics
- name: matchms_metadata_merge
  owner: recetox
  revisions:
  - 1fd950c5586a
  - 81e6df6ccd9a
  - caf007467c84
  - e052eac8be4a
  - fc1a698a71e8
  tool_panel_section_label: Metabolomics
- name: waveica
  owner: recetox
  revisions:
  - 071a424241ec
  - 1a2aeb8137bf
  - 425c0494ec2d
  - 6480c6d5fa36
  - 6fc9f6dbcef5
  - 821062fc5782
  - b77023c41c76
  - bf32ae95a06f
  - dbbedb14b44c
  tool_panel_section_label: Metabolomics
- name: xtb_molecular_optimization
  owner: recetox
  revisions:
  - 6e1ef071fffc
  - cba7123c2741
  - d5633eaf3552
  tool_panel_section_label: ChemicalToolBox
- name: rem_complex
  owner: recetox
  revisions:
  - 1dc9f5a3163d
  - 567327a97ad2
  - 60db8070a5c3
  tool_panel_section_label: ChemicalToolBox
- name: recetox_msfinder
  owner: recetox
  revisions:
  - a48a1c23257c
  - e7eff0c9baa3
  tool_panel_section_label: Metabolomics
- name: qcxms_neutral_run
  owner: recetox
  revisions:
  - 0d9d72ef658f
  - 33b7a99b6de3
  - 475bbef634d4
  - 6c118de4b735
  - 8f465c0c3b6c
  - c1f752721827
  - c40784ec1fdd
  tool_panel_section_label: ChemicalToolBox
- name: qcxms_production_run
  owner: recetox
  revisions:
  - 356f7916ac07
  - 69ba95cdcff2
  - b566b27247f7
  - cbe34f060712
  tool_panel_section_label: ChemicalToolBox
- name: qcxms_getres
  owner: recetox
  revisions:
  - 0109f244d25a
  - 720958b09af4
  - 89b026d67e9f
  - af8839475b43
  - ef51824f6d04
  tool_panel_section_label: ChemicalToolBox
- name: use_theoretical_mz_annotations
  owner: recetox
  revisions:
  - 34d6b282ab6a
  - c68193aed29e
  tool_panel_section_label: Metabolomics
- name: rename_annotated_feature
  owner: recetox
  revisions:
  - 268fcec93d9c
  tool_panel_section_label: Metabolomics
- name: assign_ri_from_comment
  owner: recetox
  revisions:
  - 6975af39ba79
  - 7226eba9c09d
  - 97ccdb1ba47c
  - e2fa3b23d7db
  tool_panel_section_label: Metabolomics
- name: isolib
  owner: recetox
  revisions:
  - 06f2d0d6d107
  - 2b1118bce0b1
  - 6b0fef8a77c0
  - 964b4559eb1b
  - f0fe957df1cc
  tool_panel_section_label: Metabolomics
- name: gc_derivatization
  owner: recetox
  revisions:
  - 600b391827e3
  tool_panel_section_label: Metabolomics
- name: xcms_plot_raw
  owner: workflow4metabolomics
  revisions:
  - 520448a32548
  - 8b8d360316c3
  tool_panel_section_label: Metabolomics
- name: xcms_plot_eic
  owner: workflow4metabolomics
  revisions:
  - 51015f22fcb7
  - cbedca3ba6e1
  tool_panel_section_label: Metabolomics
- name: spec2vec_similarity
  owner: recetox
  revisions:
  - 721a4e666191
  tool_panel_section_label: Metabolomics
- name: spec2vec_training
  owner: recetox
  revisions:
  - 9d917de87cca
  tool_panel_section_label: Metabolomics
- name: mfassignr_snplot
  owner: recetox
  revisions:
  - 7279d7a37c43
  - 7579b0cda787
  - ccd9b0c1aee6
  - f19c0631b9e5
  tool_panel_section_label: Metabolomics
- name: mfassignr_histnoise
  owner: recetox
  revisions:
  - 5d99cb9755da
  - 5dd25cf1ac0a
  - 9654573e6889
  tool_panel_section_label: Metabolomics
- name: mfassignr_kmdnoise
  owner: recetox
  revisions:
  - 634ae07958a2
  - 99d021734000
  - a7a823839ae3
  tool_panel_section_label: Metabolomics
- name: mfassignr_isofiltr
  owner: recetox
  revisions:
  - 1c199c3d5993
  - b880fcae60ea
  - e4ddc3bc7e15
  - ef0388b42f7a
  tool_panel_section_label: Metabolomics
- name: mfassignr_mfassign
  owner: recetox
  revisions:
  - 0492fff60960
  - 22c80f584bb1
  - 4422c60a4b71
  - 9cbbfd54d7c4
  tool_panel_section_label: Metabolomics
- name: mfassignr_mfassigncho
  owner: recetox
  revisions:
  - 59326d3b9c52
  - 5ea9dd423109
  - da64d663694b
  - db058392cb2e
  tool_panel_section_label: Metabolomics
- name: mfassignr_recal
  owner: recetox
  revisions:
  - 13ef8b748af9
  - 861917f1a211
  - cfcf45ba58be
  tool_panel_section_label: Metabolomics
- name: mfassignr_recallist
  owner: recetox
  revisions:
  - 4f671baab2fd
  - 6c7b17d38a1d
  - 7e5ccc8b6f6e
  tool_panel_section_label: Metabolomics
- name: mfassignr_findrecalseries
  owner: recetox
  revisions:
  - 18e13043167d
  - 1b4881c150cc
  tool_panel_section_label: Metabolomics
- name: rcx_tk
  owner: recetox
  revisions:
  - 320ebaa133e5
  - 54401f9d1a30
  - 9b4b624c4d60
  tool_panel_section_label: Metabolomics
- name: target_screen
  owner: recetox
  revisions:
  - 6d51be3d7bb5
  - d4c2d5bc0524
  tool_panel_section_label: Metabolomics
- name: ms2deepscore_config_generator
  owner: recetox
  revisions:
  - 7e4ac334fc33
  tool_panel_section_label: Metabolomics
- name: ms2deepscore_similarity
  owner: recetox
  revisions:
  - 58c95171a0d3
  tool_panel_section_label: Metabolomics
- name: ms2deepscore_training
  owner: recetox
  revisions:
  - 0a0529822d91
  tool_panel_section_label: Metabolomics
- name: bioconductor_scp
  owner: recetox
  revisions:
  - 8a6c7302de66
  - cd2f3a280463
  tool_panel_section_label: Proteomics
- name: bioconductor_msnbase_smooth_mz
  owner: recetox
  revisions:
  - 00e058234fbf
  tool_panel_section_label: Metabolomics
- name: bioconductor_msnbase_smooth_chromatogram
  owner: recetox
  revisions:
  - 492350f45be9
  tool_panel_section_label: Metabolomics
- name: bioconductor_msnbase_centroid
  owner: recetox
  revisions:
  - 4018639dc0a5
  tool_panel_section_label: Metabolomics