diff --git a/a.zarr/.zarray b/a.zarr/.zarray
new file mode 100644
index 0000000000..1981520fe5
--- /dev/null
+++ b/a.zarr/.zarray
@@ -0,0 +1,22 @@
+{
+ "chunks": [
+ 100,
+ 100
+ ],
+ "compressor": {
+ "blocksize": 0,
+ "clevel": 5,
+ "cname": "lz4",
+ "id": "blosc",
+ "shuffle": 1
+ },
+ "dtype": "
Indices and tables
------------------
diff --git a/tox.ini b/tox.ini
index 12ad6bc8ad..052464f4e7 100644
--- a/tox.ini
+++ b/tox.ini
@@ -5,6 +5,7 @@
[tox]
envlist = py38-npy{120,latest}, py39, py310, docs
+isolated_build = True
[testenv]
install_command = pip install --no-binary=numcodecs {opts} {packages}
@@ -39,7 +40,7 @@ deps =
-rrequirements_dev_optional.txt
[testenv:docs]
-basepython = python3.8
+basepython = python3.10
changedir = docs
deps =
-rrequirements_rtfd.txt
diff --git a/zarr-dev/bin/Activate.ps1 b/zarr-dev/bin/Activate.ps1
new file mode 100644
index 0000000000..b49d77ba44
--- /dev/null
+++ b/zarr-dev/bin/Activate.ps1
@@ -0,0 +1,247 @@
+<#
+.Synopsis
+Activate a Python virtual environment for the current PowerShell session.
+
+.Description
+Pushes the python executable for a virtual environment to the front of the
+$Env:PATH environment variable and sets the prompt to signify that you are
+in a Python virtual environment. Makes use of the command line switches as
+well as the `pyvenv.cfg` file values present in the virtual environment.
+
+.Parameter VenvDir
+Path to the directory that contains the virtual environment to activate. The
+default value for this is the parent of the directory that the Activate.ps1
+script is located within.
+
+.Parameter Prompt
+The prompt prefix to display when this virtual environment is activated. By
+default, this prompt is the name of the virtual environment folder (VenvDir)
+surrounded by parentheses and followed by a single space (ie. '(.venv) ').
+
+.Example
+Activate.ps1
+Activates the Python virtual environment that contains the Activate.ps1 script.
+
+.Example
+Activate.ps1 -Verbose
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and shows extra information about the activation as it executes.
+
+.Example
+Activate.ps1 -VenvDir C:\Users\MyUser\Common\.venv
+Activates the Python virtual environment located in the specified location.
+
+.Example
+Activate.ps1 -Prompt "MyPython"
+Activates the Python virtual environment that contains the Activate.ps1 script,
+and prefixes the current prompt with the specified string (surrounded in
+parentheses) while the virtual environment is active.
+
+.Notes
+On Windows, it may be required to enable this Activate.ps1 script by setting the
+execution policy for the user. You can do this by issuing the following PowerShell
+command:
+
+PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
+
+For more information on Execution Policies:
+https://go.microsoft.com/fwlink/?LinkID=135170
+
+#>
+Param(
+ [Parameter(Mandatory = $false)]
+ [String]
+ $VenvDir,
+ [Parameter(Mandatory = $false)]
+ [String]
+ $Prompt
+)
+
+<# Function declarations --------------------------------------------------- #>
+
+<#
+.Synopsis
+Remove all shell session elements added by the Activate script, including the
+addition of the virtual environment's Python executable from the beginning of
+the PATH variable.
+
+.Parameter NonDestructive
+If present, do not remove this function from the global namespace for the
+session.
+
+#>
+function global:deactivate ([switch]$NonDestructive) {
+ # Revert to original values
+
+ # The prior prompt:
+ if (Test-Path -Path Function:_OLD_VIRTUAL_PROMPT) {
+ Copy-Item -Path Function:_OLD_VIRTUAL_PROMPT -Destination Function:prompt
+ Remove-Item -Path Function:_OLD_VIRTUAL_PROMPT
+ }
+
+ # The prior PYTHONHOME:
+ if (Test-Path -Path Env:_OLD_VIRTUAL_PYTHONHOME) {
+ Copy-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME -Destination Env:PYTHONHOME
+ Remove-Item -Path Env:_OLD_VIRTUAL_PYTHONHOME
+ }
+
+ # The prior PATH:
+ if (Test-Path -Path Env:_OLD_VIRTUAL_PATH) {
+ Copy-Item -Path Env:_OLD_VIRTUAL_PATH -Destination Env:PATH
+ Remove-Item -Path Env:_OLD_VIRTUAL_PATH
+ }
+
+ # Just remove the VIRTUAL_ENV altogether:
+ if (Test-Path -Path Env:VIRTUAL_ENV) {
+ Remove-Item -Path env:VIRTUAL_ENV
+ }
+
+ # Just remove VIRTUAL_ENV_PROMPT altogether.
+ if (Test-Path -Path Env:VIRTUAL_ENV_PROMPT) {
+ Remove-Item -Path env:VIRTUAL_ENV_PROMPT
+ }
+
+ # Just remove the _PYTHON_VENV_PROMPT_PREFIX altogether:
+ if (Get-Variable -Name "_PYTHON_VENV_PROMPT_PREFIX" -ErrorAction SilentlyContinue) {
+ Remove-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Scope Global -Force
+ }
+
+ # Leave deactivate function in the global namespace if requested:
+ if (-not $NonDestructive) {
+ Remove-Item -Path function:deactivate
+ }
+}
+
+<#
+.Description
+Get-PyVenvConfig parses the values from the pyvenv.cfg file located in the
+given folder, and returns them in a map.
+
+For each line in the pyvenv.cfg file, if that line can be parsed into exactly
+two strings separated by `=` (with any amount of whitespace surrounding the =)
+then it is considered a `key = value` line. The left hand string is the key,
+the right hand is the value.
+
+If the value starts with a `'` or a `"` then the first and last character is
+stripped from the value before being captured.
+
+.Parameter ConfigDir
+Path to the directory that contains the `pyvenv.cfg` file.
+#>
+function Get-PyVenvConfig(
+ [String]
+ $ConfigDir
+) {
+ Write-Verbose "Given ConfigDir=$ConfigDir, obtain values in pyvenv.cfg"
+
+ # Ensure the file exists, and issue a warning if it doesn't (but still allow the function to continue).
+ $pyvenvConfigPath = Join-Path -Resolve -Path $ConfigDir -ChildPath 'pyvenv.cfg' -ErrorAction Continue
+
+ # An empty map will be returned if no config file is found.
+ $pyvenvConfig = @{ }
+
+ if ($pyvenvConfigPath) {
+
+ Write-Verbose "File exists, parse `key = value` lines"
+ $pyvenvConfigContent = Get-Content -Path $pyvenvConfigPath
+
+ $pyvenvConfigContent | ForEach-Object {
+ $keyval = $PSItem -split "\s*=\s*", 2
+ if ($keyval[0] -and $keyval[1]) {
+ $val = $keyval[1]
+
+ # Remove extraneous quotations around a string value.
+ if ("'""".Contains($val.Substring(0, 1))) {
+ $val = $val.Substring(1, $val.Length - 2)
+ }
+
+ $pyvenvConfig[$keyval[0]] = $val
+ Write-Verbose "Adding Key: '$($keyval[0])'='$val'"
+ }
+ }
+ }
+ return $pyvenvConfig
+}
+
+
+<# Begin Activate script --------------------------------------------------- #>
+
+# Determine the containing directory of this script
+$VenvExecPath = Split-Path -Parent $MyInvocation.MyCommand.Definition
+$VenvExecDir = Get-Item -Path $VenvExecPath
+
+Write-Verbose "Activation script is located in path: '$VenvExecPath'"
+Write-Verbose "VenvExecDir Fullname: '$($VenvExecDir.FullName)"
+Write-Verbose "VenvExecDir Name: '$($VenvExecDir.Name)"
+
+# Set values required in priority: CmdLine, ConfigFile, Default
+# First, get the location of the virtual environment, it might not be
+# VenvExecDir if specified on the command line.
+if ($VenvDir) {
+ Write-Verbose "VenvDir given as parameter, using '$VenvDir' to determine values"
+}
+else {
+ Write-Verbose "VenvDir not given as a parameter, using parent directory name as VenvDir."
+ $VenvDir = $VenvExecDir.Parent.FullName.TrimEnd("\\/")
+ Write-Verbose "VenvDir=$VenvDir"
+}
+
+# Next, read the `pyvenv.cfg` file to determine any required value such
+# as `prompt`.
+$pyvenvCfg = Get-PyVenvConfig -ConfigDir $VenvDir
+
+# Next, set the prompt from the command line, or the config file, or
+# just use the name of the virtual environment folder.
+if ($Prompt) {
+ Write-Verbose "Prompt specified as argument, using '$Prompt'"
+}
+else {
+ Write-Verbose "Prompt not specified as argument to script, checking pyvenv.cfg value"
+ if ($pyvenvCfg -and $pyvenvCfg['prompt']) {
+ Write-Verbose " Setting based on value in pyvenv.cfg='$($pyvenvCfg['prompt'])'"
+ $Prompt = $pyvenvCfg['prompt'];
+ }
+ else {
+ Write-Verbose " Setting prompt based on parent's directory's name. (Is the directory name passed to venv module when creating the virtual environment)"
+ Write-Verbose " Got leaf-name of $VenvDir='$(Split-Path -Path $venvDir -Leaf)'"
+ $Prompt = Split-Path -Path $venvDir -Leaf
+ }
+}
+
+Write-Verbose "Prompt = '$Prompt'"
+Write-Verbose "VenvDir='$VenvDir'"
+
+# Deactivate any currently active virtual environment, but leave the
+# deactivate function in place.
+deactivate -nondestructive
+
+# Now set the environment variable VIRTUAL_ENV, used by many tools to determine
+# that there is an activated venv.
+$env:VIRTUAL_ENV = $VenvDir
+
+if (-not $Env:VIRTUAL_ENV_DISABLE_PROMPT) {
+
+ Write-Verbose "Setting prompt to '$Prompt'"
+
+ # Set the prompt to include the env name
+ # Make sure _OLD_VIRTUAL_PROMPT is global
+ function global:_OLD_VIRTUAL_PROMPT { "" }
+ Copy-Item -Path function:prompt -Destination function:_OLD_VIRTUAL_PROMPT
+ New-Variable -Name _PYTHON_VENV_PROMPT_PREFIX -Description "Python virtual environment prompt prefix" -Scope Global -Option ReadOnly -Visibility Public -Value $Prompt
+
+ function global:prompt {
+ Write-Host -NoNewline -ForegroundColor Green "($_PYTHON_VENV_PROMPT_PREFIX) "
+ _OLD_VIRTUAL_PROMPT
+ }
+ $env:VIRTUAL_ENV_PROMPT = $Prompt
+}
+
+# Clear PYTHONHOME
+if (Test-Path -Path Env:PYTHONHOME) {
+ Copy-Item -Path Env:PYTHONHOME -Destination Env:_OLD_VIRTUAL_PYTHONHOME
+ Remove-Item -Path Env:PYTHONHOME
+}
+
+# Add the venv to the PATH
+Copy-Item -Path Env:PATH -Destination Env:_OLD_VIRTUAL_PATH
+$Env:PATH = "$VenvExecDir$([System.IO.Path]::PathSeparator)$Env:PATH"
diff --git a/zarr-dev/bin/activate b/zarr-dev/bin/activate
new file mode 100644
index 0000000000..28a8c10e9f
--- /dev/null
+++ b/zarr-dev/bin/activate
@@ -0,0 +1,69 @@
+# This file must be used with "source bin/activate" *from bash*
+# you cannot run it directly
+
+deactivate () {
+ # reset old environment variables
+ if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then
+ PATH="${_OLD_VIRTUAL_PATH:-}"
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ fi
+ if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then
+ PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}"
+ export PYTHONHOME
+ unset _OLD_VIRTUAL_PYTHONHOME
+ fi
+
+ # This should detect bash and zsh, which have a hash command that must
+ # be called to get it to forget past commands. Without forgetting
+ # past commands the $PATH changes we made may not be respected
+ if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then
+ hash -r 2> /dev/null
+ fi
+
+ if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then
+ PS1="${_OLD_VIRTUAL_PS1:-}"
+ export PS1
+ unset _OLD_VIRTUAL_PS1
+ fi
+
+ unset VIRTUAL_ENV
+ unset VIRTUAL_ENV_PROMPT
+ if [ ! "${1:-}" = "nondestructive" ] ; then
+ # Self destruct!
+ unset -f deactivate
+ fi
+}
+
+# unset irrelevant variables
+deactivate nondestructive
+
+VIRTUAL_ENV="/home/steph/zarr-python/zarr-dev"
+export VIRTUAL_ENV
+
+_OLD_VIRTUAL_PATH="$PATH"
+PATH="$VIRTUAL_ENV/bin:$PATH"
+export PATH
+
+# unset PYTHONHOME if set
+# this will fail if PYTHONHOME is set to the empty string (which is bad anyway)
+# could use `if (set -u; : $PYTHONHOME) ;` in bash
+if [ -n "${PYTHONHOME:-}" ] ; then
+ _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}"
+ unset PYTHONHOME
+fi
+
+if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then
+ _OLD_VIRTUAL_PS1="${PS1:-}"
+ PS1="(zarr-dev) ${PS1:-}"
+ export PS1
+ VIRTUAL_ENV_PROMPT="(zarr-dev) "
+ export VIRTUAL_ENV_PROMPT
+fi
+
+# This should detect bash and zsh, which have a hash command that must
+# be called to get it to forget past commands. Without forgetting
+# past commands the $PATH changes we made may not be respected
+if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then
+ hash -r 2> /dev/null
+fi
diff --git a/zarr-dev/bin/activate.csh b/zarr-dev/bin/activate.csh
new file mode 100644
index 0000000000..84ff26850e
--- /dev/null
+++ b/zarr-dev/bin/activate.csh
@@ -0,0 +1,26 @@
+# This file must be used with "source bin/activate.csh" *from csh*.
+# You cannot run it directly.
+# Created by Davide Di Blasi .
+# Ported to Python 3.3 venv by Andrew Svetlov
+
+alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PATH" && unset _OLD_VIRTUAL_PATH; rehash; test $?_OLD_VIRTUAL_PROMPT != 0 && set prompt="$_OLD_VIRTUAL_PROMPT" && unset _OLD_VIRTUAL_PROMPT; unsetenv VIRTUAL_ENV; unsetenv VIRTUAL_ENV_PROMPT; test "\!:*" != "nondestructive" && unalias deactivate'
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+setenv VIRTUAL_ENV "/home/steph/zarr-python/zarr-dev"
+
+set _OLD_VIRTUAL_PATH="$PATH"
+setenv PATH "$VIRTUAL_ENV/bin:$PATH"
+
+
+set _OLD_VIRTUAL_PROMPT="$prompt"
+
+if (! "$?VIRTUAL_ENV_DISABLE_PROMPT") then
+ set prompt = "(zarr-dev) $prompt"
+ setenv VIRTUAL_ENV_PROMPT "(zarr-dev) "
+endif
+
+alias pydoc python -m pydoc
+
+rehash
diff --git a/zarr-dev/bin/activate.fish b/zarr-dev/bin/activate.fish
new file mode 100644
index 0000000000..be2005d1f4
--- /dev/null
+++ b/zarr-dev/bin/activate.fish
@@ -0,0 +1,66 @@
+# This file must be used with "source /bin/activate.fish" *from fish*
+# (https://fishshell.com/); you cannot run it directly.
+
+function deactivate -d "Exit virtual environment and return to normal shell environment"
+ # reset old environment variables
+ if test -n "$_OLD_VIRTUAL_PATH"
+ set -gx PATH $_OLD_VIRTUAL_PATH
+ set -e _OLD_VIRTUAL_PATH
+ end
+ if test -n "$_OLD_VIRTUAL_PYTHONHOME"
+ set -gx PYTHONHOME $_OLD_VIRTUAL_PYTHONHOME
+ set -e _OLD_VIRTUAL_PYTHONHOME
+ end
+
+ if test -n "$_OLD_FISH_PROMPT_OVERRIDE"
+ functions -e fish_prompt
+ set -e _OLD_FISH_PROMPT_OVERRIDE
+ functions -c _old_fish_prompt fish_prompt
+ functions -e _old_fish_prompt
+ end
+
+ set -e VIRTUAL_ENV
+ set -e VIRTUAL_ENV_PROMPT
+ if test "$argv[1]" != "nondestructive"
+ # Self-destruct!
+ functions -e deactivate
+ end
+end
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+set -gx VIRTUAL_ENV "/home/steph/zarr-python/zarr-dev"
+
+set -gx _OLD_VIRTUAL_PATH $PATH
+set -gx PATH "$VIRTUAL_ENV/bin" $PATH
+
+# Unset PYTHONHOME if set.
+if set -q PYTHONHOME
+ set -gx _OLD_VIRTUAL_PYTHONHOME $PYTHONHOME
+ set -e PYTHONHOME
+end
+
+if test -z "$VIRTUAL_ENV_DISABLE_PROMPT"
+ # fish uses a function instead of an env var to generate the prompt.
+
+ # Save the current fish_prompt function as the function _old_fish_prompt.
+ functions -c fish_prompt _old_fish_prompt
+
+ # With the original prompt function renamed, we can override with our own.
+ function fish_prompt
+ # Save the return status of the last command.
+ set -l old_status $status
+
+ # Output the venv prompt; color taken from the blue of the Python logo.
+ printf "%s%s%s" (set_color 4B8BBE) "(zarr-dev) " (set_color normal)
+
+ # Restore the return status of the previous command.
+ echo "exit $old_status" | .
+ # Output the original/"old" prompt.
+ _old_fish_prompt
+ end
+
+ set -gx _OLD_FISH_PROMPT_OVERRIDE "$VIRTUAL_ENV"
+ set -gx VIRTUAL_ENV_PROMPT "(zarr-dev) "
+end
diff --git a/zarr-dev/bin/pip b/zarr-dev/bin/pip
new file mode 100755
index 0000000000..c143b2d574
--- /dev/null
+++ b/zarr-dev/bin/pip
@@ -0,0 +1,8 @@
+#!/home/steph/zarr-python/zarr-dev/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+ sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+ sys.exit(main())
diff --git a/zarr-dev/bin/pip3 b/zarr-dev/bin/pip3
new file mode 100755
index 0000000000..c143b2d574
--- /dev/null
+++ b/zarr-dev/bin/pip3
@@ -0,0 +1,8 @@
+#!/home/steph/zarr-python/zarr-dev/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+ sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+ sys.exit(main())
diff --git a/zarr-dev/bin/pip3.10 b/zarr-dev/bin/pip3.10
new file mode 100755
index 0000000000..c143b2d574
--- /dev/null
+++ b/zarr-dev/bin/pip3.10
@@ -0,0 +1,8 @@
+#!/home/steph/zarr-python/zarr-dev/bin/python3
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+ sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+ sys.exit(main())
diff --git a/zarr-dev/bin/python b/zarr-dev/bin/python
new file mode 120000
index 0000000000..b8a0adbbb9
--- /dev/null
+++ b/zarr-dev/bin/python
@@ -0,0 +1 @@
+python3
\ No newline at end of file
diff --git a/zarr-dev/bin/python3 b/zarr-dev/bin/python3
new file mode 120000
index 0000000000..ae65fdaa12
--- /dev/null
+++ b/zarr-dev/bin/python3
@@ -0,0 +1 @@
+/usr/bin/python3
\ No newline at end of file
diff --git a/zarr-dev/bin/python3.10 b/zarr-dev/bin/python3.10
new file mode 120000
index 0000000000..b8a0adbbb9
--- /dev/null
+++ b/zarr-dev/bin/python3.10
@@ -0,0 +1 @@
+python3
\ No newline at end of file
diff --git a/zarr-dev/lib64 b/zarr-dev/lib64
new file mode 120000
index 0000000000..7951405f85
--- /dev/null
+++ b/zarr-dev/lib64
@@ -0,0 +1 @@
+lib
\ No newline at end of file
diff --git a/zarr-dev/pyvenv.cfg b/zarr-dev/pyvenv.cfg
new file mode 100644
index 0000000000..266b9070b6
--- /dev/null
+++ b/zarr-dev/pyvenv.cfg
@@ -0,0 +1,3 @@
+home = /usr/bin
+include-system-site-packages = false
+version = 3.10.6