ACAD-UofA
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Guide-to-manipulating-PLINK-EIG-and-VCF-files
Guide-to-manipulating-PLINK-EIG-and-VCF-files PublicA guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in ea…
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OAGR_Selection_Paper_Helper_Scripts
OAGR_Selection_Paper_Helper_Scripts PublicHelper scripts for the "Ancient human genomes reveal a hidden history of strong selection in Eurasia" Paper
R 1
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DemographicCourseAdelaide2018
DemographicCourseAdelaide2018 PublicForked from FerRacimo/DemographicCourseAdelaide2018
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Repositories
- PopGen-Scripts Public Forked from roberta-davidson/PopGen-Scripts
Random Ancient DNA and PopGen scripts
ACAD-UofA/PopGen-Scripts’s past year of commit activity - Davidson_etal_2024-Twist Public Forked from roberta-davidson/Davidson_etal_2024-Twist
Scripts and data used in the benchmarking study of Twist Ancient Human DNA enrichment by Davidson et al. 2024
ACAD-UofA/Davidson_etal_2024-Twist’s past year of commit activity - eager Public Forked from nf-core/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
ACAD-UofA/eager’s past year of commit activity - ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT Public Forked from roberta-davidson/ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
Scripts and notes on running ADMIXTURE and smartPCA, and working with data in PLINK and EIGENSTRAT
ACAD-UofA/ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT’s past year of commit activity - mag-for-phoenix Public Forked from roberta-davidson/mag-for-phoenix
How to run nf-core/mag on University of Adelaide's "Phoenix" HPC
ACAD-UofA/mag-for-phoenix’s past year of commit activity - Davidson_etal_2023-Capture-bias-paper Public Forked from roberta-davidson/Davidson_etal_2023-Capture-bias-paper
Scripts used for analysis and plot generation for the capture bias paper.
ACAD-UofA/Davidson_etal_2023-Capture-bias-paper’s past year of commit activity - Guide-to-manipulating-PLINK-EIG-and-VCF-files Public
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
ACAD-UofA/Guide-to-manipulating-PLINK-EIG-and-VCF-files’s past year of commit activity - 2022_Adelaide_Code_Club Public Forked from EisenRa/2022_Adelaide_Code_Club
A fortnightly datascience / R training group.
ACAD-UofA/2022_Adelaide_Code_Club’s past year of commit activity - Human-group-workflow Public
An overview of everything technical that we do from lab to bioinformatics (discussions from 2022 humans group)
ACAD-UofA/Human-group-workflow’s past year of commit activity - XRR-pipeline-for-sequencing-data Public Forked from xavierrocarada/XRR-pipeline-for-sequencing-data-aDNA
ACAD-UofA/XRR-pipeline-for-sequencing-data’s past year of commit activity
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