Issue with shiny graphing (running ./angsd-wrapper) #3
Description
Hi guys,
I am here to report a problem I had when running ./angsd-wrapper shiny graphing. After doing the whole tutorial (which is very helpful, thanks for that!), I tried to run shiny graphing and got this:
~/Desktop/programs/angsd-wrapper$ ./angsd-wrapper shiny graphing
angsd-wrapper running from /home/carlos/Desktop/programs/angsd-wrapper
Loading required package: methods
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2
Attaching package: ‘Hmisc’
The following objects are masked from ‘package:base’:
format.pval, units
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/carlos/Desktop/programs/angsd-wrapper/.RLibs/ape/libs/ape.so':
libRlapack.so: cannot open shared object file: No such file or directory
Execution halted
However, this directory exists:
~/Desktop/programs/angsd-wrapper$ ls /home/carlos/Desktop/programs/angsd-wrapper/.RLibs/ape/libs
ape.so
Re-installing the 'ape' package in R did not change the output. I did it and it automatically installed where I have my R-3.4:
> install.packages('ape')
Installing package into ‘/home/carlos/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
...
* DONE (ape)
The downloaded source packages are in
‘/tmp/RtmpgvgvS3/downloaded_packages’
I tried adding /home/carlos/R/x86_64-pc-linux-gnu-library/3.4 in my PATH variable of .bashrc and the result is still the same:
export PATH="/home/carlos/R/x86_64-pc-linux-gnu-library/3.4/:$PATH"
export LD_LIBRARY_PATH=/home/carlos/Desktop/programs/angsd-wrapper/.RLibs/ape/libs/ape.so:${LD_LIBRARY_PATH}
I saw a similar issue here: mojaveazure/angsd-wrapper#47 and I realized I had also installed anaconda in my PC. I tried to deactivate it (adding # to #export PATH="/home/carlos/miniconda3/condabin/:$PATH" in .bashrc), but I still had the same issue.
What could be wrong?
Best regards and thanks