CZI dimensions not being read properly for multi scene

[evamaxfield]

Reproducible using the largest czi in the resources directory:

from aicsimageio import AICSImage

im = AICSImage("s_3_t_1_c_3_z_5.czi")
im.data.shape  # returns (3, 1, 3, 5, 4029, 5476)

It finds the correct Scene size but something is wonky about the Y and X. Y should be 325 and X should be 475.

For comparison here is the output of reading the smallest czi:

im = AICSImage("s_1_t_1_c_1_z_1.czi")
im.data.shape  # returns (1, 1, 1, 1, 325, 475)

[evamaxfield]

Long delayed update: This is being fixed by upgrading pylibczi and using it as our CZI reader thanks to @heeler. That update will hopefully be pulled in soon^tm.

[heeler]

So what I think is happening here is that the current reader for czi's uses CziFile to read the image. I don't believe it supports multi-scene so the fact that it reads at all supprises me. Once we implement the new reader we should get back an appropriately shaped Numpy.NDArray.