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[ignore] opened in error to debug ci#340

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ianhi wants to merge 29 commits into
AllenCellModeling:mainfrom
ianhi:glob-reader
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[ignore] opened in error to debug ci#340
ianhi wants to merge 29 commits into
AllenCellModeling:mainfrom
ianhi:glob-reader

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@ianhi

@ianhi ianhi commented Oct 18, 2021

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oops! sorry this was meant to be on my fork to debug ci stuff

jrussell25 and others added 29 commits October 13, 2021 14:14
GlobReader

WIP glob reader with working _read_delayed

working _read_delayed and _read_immediate for 2d tiffs

better check for single file shape

formatting

working 2d and 3d read immediate

docstring and formatting

small cleanup
test 3d case (and commented broken test for 4d)

4d images working immediate reads and certain chunks

test 3d and some 4d cases

tests passing of 2,3,4 d images
fix typo in comments

Co-authored-by: Madison Swain-Bowden <bowdenm@spu.edu>
- Add glob_scene_character argument that defaults to "S"
- Add level and chunkmode arguments to imread calls
- Add some comments around defualt indexer function
Check whether AICSimage correctly determines the reader given a path
with a wildcard "*" in it.

Also add some catches in aics_image.py and tiff_glob_reader.py for path
objects rather than strings.
@ianhi

ianhi commented Oct 18, 2021

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oops! sorry this was meant to be on my fork to debug ci stuff

@ianhi ianhi closed this Oct 18, 2021
@ianhi ianhi changed the title Glob reader [ignore] opened in error to debug ci Oct 18, 2021
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2 participants