I build genomic and fertility-tech products end to end — from designing NGS pipelines to shaping complete lab-to-report systems. My work blends bioinformatics, product ownership, ML/AI exploration, and engineering to turn complex biological workflows into usable software.
- Own and deliver fertility & clinical genomics products (PGTA, NIPT, Genetic Compatibility, Microbiome)
- Build Nextflow + Docker + AWS pipelines for WES/WGS, RNA-seq, PGTA, metagenomics
- Design drug–gene interaction & pharmacogenomics pipelines
- Lead project management, requirement analysis, team coordination
- Architect lab-to-report automation for clinics and sequencing labs
- Bridge the gap between biology, ML, and software engineering
- Nextflow DSL2 pipelines (clinical + research)
- Drug–gene interaction analysis (PharmGKB, DGIdb, OpenTargets)
- Image processing for bioinformatics (colony counting, plate QC, microscopy QC)
- ML/AI for genomics workflows
- Fertility-tech & genomics product design
- LIMS features and lab automation
- Clinical variant reporting pipelines
- Large-scale data engineering
- Applied Machine Learning for genomics
- Applied AI for pattern recognition in sequencing data
- Image Processing / Computer Vision (OpenCV-based tools)
- Drug response prediction approaches
- Deep dive into Nextflow internals
- Command-line heavy data workflows
| Project | Description | Stack |
|---|---|---|
| PGTA Analysis System | Full pipeline + reporting workflow for aneuploidy detection | Nextflow, Docker, AWS, Python |
| NIPT Nanopore Workflow | End-to-end QC + reporting | Nextflow, Nanopore, AWS |
| Drug–Gene Interaction Pipeline | Gene variants → drug mapping → clinical recommendations | Python, DGIdb, PharmGKB |
| Image Processing Toolkit | Colony counting, plate QC, brightness/contrast correction | Python, OpenCV |
| Genetic Compatibility Test | Lab-to-report clinical genetics system | Django, Python, AWS |
| Microbiome Profiling Portal | Register → sequence → report | Next.js, Django, S3, Nextflow |
| RNA-seq Analysis Suite | Alignment, QC, DE, multiQC automation | Nextflow, R, Docker |
Bioinformatics • Genomics • PGTA • NIPT • ML • AI • Image Processing • AWS • Nextflow • LIMS • Product Ownership • Variant Calling • Drug–Gene Interaction • Clinical Pipelines • Data Engineering