FileNotFoundError: [Errno 2] No such file or directory: 'ResultsIdentify/Complete_summary.csv'

[lnguyen1991]

I get the following errors:
Creating folders if necessary...
Running CRISPR array search, it may take a while...
Traceback (most recent call last):
File "CRISPRtracrRNA.py", line 46, in
main()
File "CRISPRtracrRNA.py", line 29, in main
complete_tracr_search = CompleteTracrSearchWithModel(folder_output=folder_output,
File "/Users/longnguyen/CRISPRtracrRNA/modules/pipelines.py", line 35, in init
self._pipeline_run()
File "/Users/longnguyen/CRISPRtracrRNA/modules/pipelines.py", line 44, in _pipeline_run
dict_arrays = CRISPRIdentifySummaryParser(crispr_identify_summary_file).output()
File "/Users/longnguyen/CRISPRtracrRNA/modules/crispr_identify_summary_parser.py", line 18, in init
self._parse_file()
File "/Users/longnguyen/CRISPRtracrRNA/modules/crispr_identify_summary_parser.py", line 21, in _parse_file
with open(self.summary_file) as f:
FileNotFoundError: [Errno 2] No such file or directory: 'ResultsIdentify/Complete_summary.csv'

[Huanle]

Hi @lnguyen1991 ,

Have you solved the issue.
I ran into the same. It would greatly help me if you have a solution.

Cheers - Huanle

[Huanle]

Ok. I found the solution:

• link downloaded repositories for CRISPRidentify and CRISPRcasIdentifier inside the tools folder. Linking only *py scripts is not enough.
• make software under tools/infernal/binaries/ executable.

[lnguyen1991]

I have not been able to fix it. Can you elaborate on how you fixed it?

[Alexander-Mitrofanov]

Thank you for expressing interest in our tool. We aim to implement the necessary fixes within the next two weeks.

[Huanle]

I have not been able to fix it. Can you elaborate on how you fixed it?

lnside tools/CRISPRidentify/, i have:
CRISPRidentify -> ../../../CRISPRidentify/

Inside tools/CRISPRcasIdentifier, i have:
CRISPRcasIdentifier -> ../../../CRISPRcasIdentifier-1.1.0/

CRISPRidentify and CRISPRcasIdentifier-1.1.0 were installed somewhere else.

I made programs in tools/infernal/binaries/ executable.