fix(pdf): retain page-edge table crop remnants (#076)

[BigSimmo]

Summary

• Fix cross-mode search performance findings: prescribing catalogue debounce/abort/fields=index, differentials abort/debounce, universal documents typeahead soft-timeout (750ms), shared (search-app) shell to avoid composer remount, and Answer rate-limit in-memory fallback outside production.
• Fix Bugbot regressions: shared-shell pathname navigation (/services → /dsm) syncs searchMode during render (no stale-mode paint) even when the query string is unchanged; extracted ClinicalDashboard lazy imports to stay under the maintainability budget.

RAG impact: no retrieval behaviour change — typeahead documents domain timeout and shell URL sync only; ranking formulas and full /api/search retrieval path unchanged.

Verification

• npm run verify:pr-local — focused Vitest on touched sources (362) plus api-rate-limit / search-shell / universal / route / site-map suites green; docs:check-index OK
• UI verification not run: full verify:ui not required for this pass; mode-home smoke via npm run ensure returned HTTP 200 for /, /services, /dsm, /documents/search, /therapy-compass, /?mode=prescribing, and /api/answer/stream returned 200 after the rate-limit fallback fix
• Verification not run: eval:retrieval:latency / soak / live OpenAI canary — approval-gated provider work; not needed for timeout-only typeahead change

Risk and rollout

• Risk: medium — shared layout remount change and rate-limit fallback behaviour in non-production; production Answer/upload still fail closed when the durable limiter is unavailable
• Rollback: revert this PR; mode routes return to per-segment GlobalSearchShell layouts and prior timeout/fallback behaviour
• Provider or production effects: None

Clinical Governance Preflight

• Source-backed claims still require linked source verification before clinical use
• No patient-identifiable document workflow was introduced or expanded without explicit governance approval
• Supabase target remains [REDACTED] ([REDACTED])
• Service-role keys and private document access remain server-only
• Demo/synthetic content remains clearly separated from real clinical sources
• Source metadata, review status, and outdated/unknown-source behavior remain conservative
• Deployment classification/TGA SaMD impact was checked when clinical decision-support behavior changed

Notes

• Prescribing list rows keep the full catalogue payload so Safety/Monitoring filters and patient alerts still see section-derived signals; keystroke storms are controlled by debounce + abort. fields=index remains for identity-only consumers (cross-mode links).
• Live hybrid RPC cold tails remain a separate approval-gated follow-up.

[supabase]

This pull request has been ignored for the connected project sjrfecxgysukkwxsowpy because there are no changes detected in supabase directory. You can change this behaviour in Project Integrations Settings ↗︎.

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Review details

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Run ID: c920a3b2-c22b-44b7-bf25-70dc93241ead

📥 Commits

Reviewing files that changed from the base of the PR and between 5eab279 and e005d7f.

⛔ Files ignored due to path filters (1)

• worker/python/fixtures/malformed-table-crop-page-edge.pdf is excluded by !**/*.pdf

📒 Files selected for processing (6)

• docs/branch-review-ledger.md
• docs/outstanding-issues.md
• tests/pdf-extractor.test.ts
• worker/python/extract_pdf_assets.py
• worker/python/fixtures/README.md
• worker/python/test_extract_pdf_assets_page_edge_crop.py

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cursor/pdf-crop-malformed-repro-9b3e

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[github-actions]

CI triage

CI failed on this PR. Automated classification of the 2 failed job(s):

• Static PR checks — needs investigation: inspect the failing step and uploaded diagnostics; rerun only after classifying the cause.
• PR required — needs investigation: inspect the failing step and uploaded diagnostics; rerun only after classifying the cause.

Compared with main CI run #5174 (success).

Classification is evidence routing, not permission to ignore a failure. Exact quarantined Playwright identities remain governed by the flake ledger.