Save Codex local changes

.github/pull_request_template.md

@@ -0,0 +1,27 @@
+## Summary
+
+-
+
+## Verification
+
+- [ ] `npm run verify:cheap`
+- [ ] `npm run verify:ui` when UI, routing, styling, browser behavior, reduced-motion, or forced-colors behavior changed
+- [ ] `npm run verify:release` before release or handoff confidence claims
+- [ ] `npm run format:check`
+- [ ] `npm run check:production-readiness` when clinical workflow, privacy, environment, Supabase, source governance, or deployment behavior changed
+
+## Clinical Governance Preflight
+
+Complete this section when the change touches ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output.
+
+- [ ] Source-backed claims still require linked source verification before clinical use
+- [ ] No patient-identifiable document workflow was introduced or expanded without explicit governance approval
+- [ ] Supabase target remains `Clinical KB Database` (`sjrfecxgysukkwxsowpy`)
+- [ ] Service-role keys and private document access remain server-only
+- [ ] Demo/synthetic content remains clearly separated from real clinical sources
+- [ ] Source metadata, review status, and outdated/unknown-source behavior remain conservative
+- [ ] Deployment classification/TGA SaMD impact was checked when clinical decision-support behavior changed
+
+## Notes
+
+-

.github/workflows/ci.yml

@@ -27,6 +27,9 @@ jobs:
       - name: Install dependencies
         run: npm ci
 
+      - name: Production readiness (CI-safe)
+        run: npm run check:production-readiness:ci
+
       - name: Lint
         run: npm run lint
 
@@ -38,3 +41,9 @@ jobs:
 
       - name: Build
         run: npm run build
+
+      - name: Install Playwright Chromium
+        run: npx playwright install --with-deps chromium
+
+      - name: Chromium UI smoke
+        run: npm run test:e2e:chromium

.github/workflows/codeql.yml

@@ -13,11 +13,11 @@ name: "CodeQL Advanced"
 
 on:
   push:
-    branches: [ "main", "protection" ]
+    branches: ["main", "protection"]
   pull_request:
-    branches: [ "main", "protection" ]
+    branches: ["main", "protection"]
   schedule:
-    - cron: '20 12 * * 2'
+    - cron: "20 12 * * 2"
   workflow_dispatch:
 
 jobs:
@@ -44,12 +44,12 @@ jobs:
       fail-fast: false
       matrix:
         include:
-        - language: actions
-          build-mode: none
-        - language: javascript-typescript
-          build-mode: none
-        - language: python
-          build-mode: none
+          - language: actions
+            build-mode: none
+          - language: javascript-typescript
+            build-mode: none
+          - language: python
+            build-mode: none
         # CodeQL supports the following values keywords for 'language': 'actions', 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'rust', 'swift'
         # Use `c-cpp` to analyze code written in C, C++ or both
         # Use 'java-kotlin' to analyze code written in Java, Kotlin or both
@@ -59,46 +59,46 @@ jobs:
         # If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
         # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
     steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
+      - name: Checkout repository
+        uses: actions/checkout@v4
 
-    # Add any setup steps before running the `github/codeql-action/init` action.
-    # This includes steps like installing compilers or runtimes (`actions/setup-node`
-    # or others). This is typically only required for manual builds.
-    # - name: Setup runtime (example)
-    #   uses: actions/setup-example@v1
+      # Add any setup steps before running the `github/codeql-action/init` action.
+      # This includes steps like installing compilers or runtimes (`actions/setup-node`
+      # or others). This is typically only required for manual builds.
+      # - name: Setup runtime (example)
+      #   uses: actions/setup-example@v1
 
-    # Initializes the CodeQL tools for scanning.
-    - name: Initialize CodeQL
-      uses: github/codeql-action/init@v4
-      with:
-        languages: ${{ matrix.language }}
-        build-mode: ${{ matrix.build-mode }}
-        # If you wish to specify custom queries, you can do so here or in a config file.
-        # By default, queries listed here will override any specified in a config file.
-        # Prefix the list here with "+" to use these queries and those in the config file.
+      # Initializes the CodeQL tools for scanning.
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v4
+        with:
+          languages: ${{ matrix.language }}
+          build-mode: ${{ matrix.build-mode }}
+          # If you wish to specify custom queries, you can do so here or in a config file.
+          # By default, queries listed here will override any specified in a config file.
+          # Prefix the list here with "+" to use these queries and those in the config file.
 
-        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
-        # queries: security-extended,security-and-quality
+          # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+          # queries: security-extended,security-and-quality
 
-    # If the analyze step fails for one of the languages you are analyzing with
-    # "We were unable to automatically build your code", modify the matrix above
-    # to set the build mode to "manual" for that language. Then modify this step
-    # to build your code.
-    # ℹ️ Command-line programs to run using the OS shell.
-    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
-    - name: Run manual build steps
-      if: matrix.build-mode == 'manual'
-      shell: bash
-      run: |
-        echo 'If you are using a "manual" build mode for one or more of the' \
-          'languages you are analyzing, replace this with the commands to build' \
-          'your code, for example:'
-        echo '  make bootstrap'
-        echo '  make release'
-        exit 1
+      # If the analyze step fails for one of the languages you are analyzing with
+      # "We were unable to automatically build your code", modify the matrix above
+      # to set the build mode to "manual" for that language. Then modify this step
+      # to build your code.
+      # ℹ️ Command-line programs to run using the OS shell.
+      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+      - name: Run manual build steps
+        if: matrix.build-mode == 'manual'
+        shell: bash
+        run: |
+          echo 'If you are using a "manual" build mode for one or more of the' \
+            'languages you are analyzing, replace this with the commands to build' \
+            'your code, for example:'
+          echo '  make bootstrap'
+          echo '  make release'
+          exit 1
 
-    - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v4
-      with:
-        category: "/language:${{matrix.language}}"
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v4
+        with:
+          category: "/language:${{matrix.language}}"

.prettierignore

@@ -9,3 +9,5 @@ sample-documents/
 dev-server*.log
 package-lock.json
 public/demo-documents/
+.tmp-visual/
+scratch/

.tmp-visual/capture.mjs

@@ -0,0 +1,13 @@
+import { chromium } from 'playwright';
+
+(async () => {
+  const browser = await chromium.launch({ headless: true });
+  const page = await browser.newPage({ viewport: { width: 1440, height: 1200 } });
+  await page.goto('http://localhost:4298', { waitUntil: 'networkidle' });
+  await page.screenshot({ path: 'C:/Dev/Apps/Database/.tmp-visual/desktop-home.png', fullPage: true });
+
+  await page.setViewportSize({ width: 390, height: 844 });
+  await page.goto('http://localhost:4298', { waitUntil: 'networkidle' });
+  await page.screenshot({ path: 'C:/Dev/Apps/Database/.tmp-visual/mobile-home.png', fullPage: true });
+  await browser.close();
+})();

.tmp-visual/check-search-api.mjs

@@ -0,0 +1,53 @@
+import { chromium } from 'playwright';
+
+(async () => {
+  const browser = await chromium.launch({ headless: true });
+  const page = await browser.newPage({ viewport: { width: 1440, height: 1200 } });
+  const events = [];
+  page.on('response', async (resp) => {
+    const url = resp.url();
+    if (url.includes('/api/')) {
+      try {
+        const text = await resp.text();
+        events.push({
+          url,
+          status: resp.status(),
+          ok: resp.ok(),
+          text: text.slice(0, 220),
+        });
+      } catch {
+        events.push({
+          url,
+          status: resp.status(),
+          ok: resp.ok(),
+          text: '',
+        });
+      }
+    }
+  });
+
+  await page.goto('http://localhost:4298', { waitUntil: 'networkidle' });
+  const input = page.locator('input[placeholder="Ask a question"]');
+  await input.fill('What monitoring is required after starting lithium?');
+
+  const askButton = page.locator('button[aria-label="Generate source-backed answer"]').first();
+  await askButton.click();
+
+  await page.waitForTimeout(12000);
+  await page.waitForLoadState('networkidle');
+
+  const state = await page.evaluate(() => ({
+    body: (document.body.innerText || '').replace(/\s+/g, ' ').slice(0, 2200),
+    statusLine: document.querySelector('.text-sm, p, h2, h3')?.textContent || '',
+    hasResultsText: (document.body.innerText || '').includes('Retrieved passages appear after a question') || false,
+    headingText: Array.from(document.querySelectorAll('h2, h3')).map((el) => (el.textContent || '').trim()),
+    ctaText: Array.from(document.querySelectorAll('button, a')).map((el) => (el.textContent || '').trim()).filter((t) => /Open source|Source PDF|Add scope|Ask|Search|Citations|Sources|Gaps|Verify/.test(t)),
+  }));
+
+  await browser.close();
+
+  console.log('RESULTS:' + JSON.stringify({
+    api: events.filter((e) => e.url.includes('/api/search') || e.url.includes('/api/tools') || e.url.includes('/api/documents') || e.url.includes('/api/local-project-id')),
+    state,
+  }, null, 2));
+})();

.tmp-visual/inspect-ask-controls.mjs

@@ -0,0 +1,42 @@
+import { chromium } from 'playwright';
+
+(async () => {
+  const browser = await chromium.launch({ headless: true });
+  const page = await browser.newPage();
+  await page.goto('http://localhost:4298', { waitUntil: 'domcontentloaded' });
+
+  const input = page.locator('input[placeholder="Ask a question"]');
+  await input.waitFor({ state: 'attached', timeout: 12000 });
+
+  const controls = await page.evaluate(() => {
+    const inp = Array.from(document.querySelectorAll('input')).find((el) => el.getAttribute('placeholder') === 'Ask a question');
+    if (!inp) return null;
+    const form = inp.closest('form');
+    const allButtons = Array.from(document.querySelectorAll('button, input[type="submit"]')).map((el) => ({
+      text: (el.textContent || '').trim(),
+      type: el.getAttribute('type') || (el.tagName === 'BUTTON' ? 'button' : ''),
+      value: el.getAttribute('value') || '',
+      aria: el.getAttribute('aria-label') || '',
+      id: el.id || '',
+    }));
+    const formButtons = form ? Array.from(form.querySelectorAll('button, input[type="submit"]')).map((el) => ({
+      text: (el.textContent || '').trim(),
+      type: el.getAttribute('type') || (el.tagName === 'BUTTON' ? 'button' : ''),
+      value: el.getAttribute('value') || '',
+      aria: el.getAttribute('aria-label') || '',
+      id: el.id || '',
+    })) : [];
+
+    return {
+      inputCount: document.querySelectorAll('input[placeholder="Ask a question"]').length,
+      inputOuterHTML: inp.outerHTML.slice(0, 400),
+      formAction: form ? form.getAttribute('action') : null,
+      formMethod: form ? form.getAttribute('method') : null,
+      formButtons,
+      allButtons: allButtons.slice(0, 80),
+    };
+  });
+
+  console.log(JSON.stringify(controls, null, 2));
+  await browser.close();
+})();

.tmp-visual/inspect-home.mjs

@@ -0,0 +1,41 @@
+import { chromium } from 'playwright';
+
+(async () => {
+  const page = await chromium.launch({ headless: true }).then(async (browser) => {
+    const p = await browser.newPage();
+    await p.goto('http://localhost:4298', { waitUntil: 'networkidle' });
+    const body = await p.evaluate(() => document.body.innerText || '');
+    const links = await p.evaluate(() => {
+      return Array.from(document.querySelectorAll('a')).map((a) => ({
+        text: (a.textContent || '').trim(),
+        href: a.getAttribute('href') || '',
+      })).filter((x) => x.text || x.href);
+    });
+
+    const buttons = await p.evaluate(() => {
+      return Array.from(document.querySelectorAll('button')).map((b) => ({
+        text: (b.textContent || '').trim(),
+        type: b.getAttribute('type') || '',
+      }));
+    });
+
+    const inputs = await p.evaluate(() => Array.from(document.querySelectorAll('input, textarea')).map((el) => ({
+      tag: el.tagName,
+      type: el.getAttribute('type') || '',
+      placeholder: el.getAttribute('placeholder') || '',
+      id: el.id || '',
+      name: el.getAttribute('name') || '',
+    })));
+
+    console.log('TITLE:' + (await p.title()));
+    console.log('URL:' + p.url());
+    console.log('HREFS:' + JSON.stringify(links.slice(0, 80), null, 2));
+    console.log('BUTTONS:' + JSON.stringify(buttons.slice(0, 80), null, 2));
+    console.log('INPUTS:' + JSON.stringify(inputs, null, 2));
+    console.log('TEXT_SNIPPET_START');
+    console.log(body.slice(0, 1200));
+    console.log('TEXT_SNIPPET_END');
+
+    await browser.close();
+  });
+})();

.tmp-visual/query-answer-stream.mjs

@@ -0,0 +1,49 @@
+import { chromium } from "playwright";
+
+(async () => {
+  const browser = await chromium.launch({ headless: true });
+  const page = await browser.newPage({ viewport: { width: 1440, height: 1200 } });
+
+  let reqPayload = null;
+  let respSnippet = null;
+
+  page.on('request', (req) => {
+    if (req.url().includes('/api/answer/stream')) {
+      reqPayload = {
+        method: req.method(),
+        postData: req.postData(),
+      };
+    }
+  });
+
+  page.on('response', async (resp) => {
+    if (resp.url().includes('/api/answer/stream')) {
+      try {
+        respSnippet = await resp.text();
+      } catch (error) {
+        respSnippet = "read-failed";
+      }
+    }
+  });
+
+  await page.goto('http://localhost:4298', { waitUntil: 'networkidle' });
+  await page.fill('input[placeholder="Ask a question"]', 'What monitoring is required after starting lithium?');
+  await page.locator('button[aria-label="Generate source-backed answer"]').click();
+  await page.waitForTimeout(5000);
+
+  const statusText = await page.evaluate(() => (document.body.innerText || '').replace(/\s+/g, ' '));
+
+  await page.screenshot({ path: 'C:/Dev/Apps/Database/.tmp-visual/query-stream-desktop.png', fullPage: true });
+  await browser.close();
+
+  console.log('RESULTS:' + JSON.stringify({
+    request: reqPayload,
+    responseSnippet: (respSnippet || '').slice(0, 1200),
+    statusText: statusText.slice(0, 2200),
+    hasNoDataMarkers: {
+      noPassages: statusText.includes('Retrieved passages appear after a question'),
+      searching: statusText.includes('Searching indexed documents'),
+      notReady: statusText.includes('Search setup is not ready') || statusText.includes('setup is not ready')
+    }
+  }, null, 2));
+})();