docs: record RAG merge closure and fix route index

docs/branch-review-ledger.md

@@ -600,3 +600,4 @@ Use this ledger to prevent repeated branch and PR reviews when the reviewed HEAD
 | 2026-07-15 | HEAD detached 570e6ba56 + WIP tree | 570e6ba56ae60bea56a32801b9cc96c5a8dfde4f | thorough multi-lens review: WIP RAG/schema + clinical design/UI + architecture/bug-hunt | Changes requested: no P0. Confirmed P1s in WIP � registryCorpusDetailHref typecheck break; ChunkLoadCache error/null poisoning across parallel hydrations; registry cleanup `::uuid` cast abort; corrector GIN unused by query path; new table-facts trgm index expression mismatch vs trgm_matches. Design: production clinical shell stays token/a11y-aligned; favourites nav multi-gradient bars and mockup hex drift fight clinical density. Residual: concurrent cache race, SECURITY DEFINER revoke gaps, schema/migration lifecycle drift, accidental pnpm-lock.yaml. | `npm run typecheck` (red: registry link callers + stale .next apps types); static SQL/expr/diff review; architecture + bug-hunt agents; design-system grep (tokens, reduced-motion, forced-colors). Not run: vitest, verify:*, ensure/browser screenshots, live Supabase/OpenAI. frontend-ui-reviewer subagent blocked by usage limit � design pass done inline. |
 | 2026-07-18 | claude/clinical-kb-pwa-review-asi3wb (PR #826) | 3d9ee5f44dea9edb1ef5af28f5f265d88d8b9f29 | PWA hardening implementation (plan Phase 1) | Implemented the three open findings from the 2026-07-17 PWA setup review with zero cache-semantics change: committed the rule-6 retirement worker `public/sw-kill-switch.js` with a five-test lock (`tests/pwa-kill-switch.test.ts`), bound the `offline.html` sha256 to the sw.js `CACHE_VERSION` pairing in `tests/pwa-manifest.test.ts` (drift trap closed), added the `?pwa-dev=0` local teardown to `pwa-lifecycle.tsx` with a dom test proving foreign workers and caches stay untouched, and updated `docs/pwa.md` rules 1 and 6 plus the local-dev cleanup step. Phase 0 of the approved plan (pr-policy `base_ref` checkout fix + the Set-Cookie worker-test case) was found already merged to main and skipped. | Focused Vitest 53/53. `verify:cheap` and the `verify:pr-local` unit stage green except `tests/pdf-extraction-budget.test.ts`, which fails identically on clean main in this container (child-process semantics; baselined twice). `verify:ui` 218 passed with 2 container-baselined pre-existing failures: the `ui-pwa` installability test (Chromium `in-incognito` artifact, reproduced from a clean-main detached worktree with its own server) and the `ui-smoke` document-viewer PDF-canvas mobile test (also fails on clean main `54229f0`; flagged as possible upstream regression). `format:check` clean for repo files. Conditional build/bundle stages deferred to the blocking hosted CI Build job on PR #826. No provider-backed checks run. |
 | 2026-07-18 | claude/clinical-kb-pwa-review-asi3wb (PR #835) | d46f381ac27b53b1bd5ac0ef77962fbd48cf3aa7 | PWA manifest and install-UX polish (plan Phase 2) | Implemented Phase 2 of the PWA plan with cache semantics untouched: `launch_handler` navigate-existing/auto and `display_override` standalone/minimal-ui in `manifest.ts`; `monochrome-192/512` icon variants rendered as a white alpha-only silhouette from the shared brand mark via `BRAND_MONOCHROME`; a one-time iOS/iPadOS Add to Home Screen hint in `pwa-lifecycle.tsx` (30-day dismissal key, never in standalone, timer-deferred eligibility for the set-state-in-effect lint rule). Docs Installability section updated; manifest screenshots remain deferred per the production-capture precondition. Phase 2 re-scout confirmed zero upstream drift before implementation. | Focused Vitest 55/55. `verify:cheap` 2773 passed/1 failed and `verify:pr-local` unit stage identical — the lone failure is the known container-only `pdf-extraction-budget` artifact (clean-main baselined; hosted CI green on #826). `test:e2e:pwa`: privacy journey passed; icon probes validated both new monochrome PNGs; sole installability error remains the container `in-incognito` artifact. `verify:ui` 219 passed/2 failed — exactly the two clean-main-baselined container artifacts, no new failures. `format:check` clean. Build/bundle stages deferred to the blocking hosted CI Build job on PR #835. No provider-backed checks run. |
+| 2026-07-18 | codex/rag-merge-final-20260718-655a | 20e5964bbfdcac0311b89c96931a43544be545a6 | RAG recovery, grounding, and latency merge closure | Reviewed the recovered historical RAG fix series against fresh `origin/main`. No additional source change was needed: current main already contains the stricter source-scoped numeric grounding, blocked-retrieval-only extractive recovery, generic LAI deterministic recovery, per-case answer latency diagnostics, and agitation lexical-path protections. The only residual branch diff was proven unreachable because every medication-chart trigger yields explicit search terms; it was intentionally not carried forward. | Full local Vitest: 301 files / 2,779 tests passed. Offline RAG fixture and production-contract validation: 36 golden cases, 21 suites, 294 tests passed. Prettier and `git diff --check` passed. `verify:cheap` reached its lint stage after all preceding static guards passed, but was blocked twice by active heavyweight jobs in other registered worktrees; it was not retried. No Supabase, OpenAI, live retrieval, production-readiness, deployment, or hosted CI command was run. |

docs/codebase-index.md

@@ -52,7 +52,7 @@ Structured map for AI agents and onboarding. For live routes, see `docs/site-map
 | Route                                                                                                     | File                                   |
 | --------------------------------------------------------------------------------------------------------- | -------------------------------------- |
 | `/`                                                                                                       | `src/app/page.tsx`                     |
-| `/applications`                                                                                           | `src/app/applications/page.tsx`        |
+| `/applications`                                                                                           | `src/app/applications/route.ts`        |
 | `/differentials`, `/diagnoses`, `/presentations`                                                          | `src/app/differentials/`               |
 | `/dsm`, `/dsm/search`, `/dsm/compare`, `/dsm/diagnoses/[slug]`                                            | `src/app/dsm/`                         |
 | `/documents/search`, `/source`, `/evidence`, `/[id]`                                                      | `src/app/documents/`                   |