feat: Major Research Platform Overhaul (Phases A-E)#34
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…ry labels, action result log, loop failure detail - Delete 6 noise hypotheses via backend/scripts/cleanup_hypotheses.py - Remove Studies tile from dashboard counters grid - Update discovery select label to 'Insight window:', add latest feed subtitle - Add persistent ActionResultLog (localStorage, max 50, collapsible) - Add error SSE event in research loop with failure detail panel - Show cycles_completed, last_experiment, elapsed time on loop failure - Timeout-specific messaging when stall_reason === 'timeout' Co-Authored-By: Oz <oz-agent@warp.dev>
…ck, anchor lifecycle - Add SSE event bus (backend/glossa_lab/api/events.py) with /api/v1/events/stream - Add foundation check automation (backend/glossa_lab/api/foundation.py) with POST /check, GET /status, PATCH /config, 15-min auto-check background task - Emit insight_trigger events on loop complete, staging archive, discovery fetch - Add anchor candidate auto-lifecycle: approved→verified→auto-archived when SA improves; rejected→expired after 7 days; auto-archive to anchor_staging_archive.json - Add POST /staging/archive endpoint for manual archive override - Mark foundation dirty on anchor changes and loop completion - Frontend: 20-min throttled insight auto-refresh with SSE subscription, freshness indicator (countdown/up-to-date/waiting), configurable interval (10/15/20/30/60m stored in localStorage) - DeciphermentPanel: foundation auto-check status display with toggle button - ResearchLoopPanel: lifecycle stage badges (staged→approved→verified→archived), auto-verified count in all-reviewed CTA - Register events_router and foundation_automation_router in main.py - Start foundation auto-check background task on app startup Co-Authored-By: Oz <oz-agent@warp.dev>
…nalyze cycle, failure handling, result feedback Co-Authored-By: Oz <oz-agent@warp.dev>
…oss-references, canonical sign seeding
- Backend: Signs API (GET /signs, /signs/summary, /signs/{id}) with in-memory index from INDUS_FINAL_ANCHORS.json, anchor_sets DB, and staging files
- Backend: seed_canonical_signs.py script to populate canonical_signs table from all anchor sources
- Frontend: SignsView with filterable sign cards, SVG glyph placeholders, confidence chips, cross-references to experiments/DEDR/reports
- Frontend: CorpusAnalyticsPanel with world corpus catalogue table, language family/script filters, overlap bars, contact score placeholder
- Frontend: Navigation wired (Signs tab renders SignsView), dashboard link to signs view
- API types added to api.ts (SignEntry, SignsSummary, etc.)
- All TS errors resolved, vite build passes
Co-Authored-By: Oz <oz-agent@warp.dev>
…s, A/B language templates, cross-culture matrix - Add experiment_ledger.json and EXPERIMENT_LEDGER.md cataloging all 60+ phase files - Add EXPERIMENT_METADATA dict + GET /api/v1/experiments/metadata endpoint - Create experiment_graph_contact_zone.py (KLDivergence, Synthesis, ABComparison) - Create experiment_graph_ab_language.py (AnchoredSALanguageAB, LMConsistencyMatrix) - Create experiment_graph_cross_culture.py (CulturalContactMatrix, ScriptFamilyClassifier) - Register all new node modules in experiment_graph.py ATOMIC_NODES - Add ExperimentLedgerEntry type + getExperimentMetadata API in frontend api.ts - Add ExperimentRegistry collapsible component in DashboardView with category filter chips, status badges, and description tooltips Co-Authored-By: Oz <oz-agent@warp.dev>
…lifecycle (resolve DashboardView conflict) Co-Authored-By: Oz <oz-agent@warp.dev>
…mplates (keep dist from HEAD) Co-Authored-By: Oz <oz-agent@warp.dev>
…fs, sign seeding (resolve main.py router conflict) Co-Authored-By: Oz <oz-agent@warp.dev>
…ailure handling (resolve SSE event conflicts) Co-Authored-By: Oz <oz-agent@warp.dev>
…Phase E compatibility, seed canonical_signs, scaffold.yml verification_tools - ai_tools.py: fix create_job() and create_text() called with positional dict instead of keyword args (was breaking run_pipeline and acquire_corpus actions) - research_loop.py: fix indentation from conflict resolution, restore 'staged' action support in staging_action endpoint (re-stage / unstage) - test_research_loop.py + test_research_loop_deep.py: update for Phase E compatibility — filter to node_complete entries, mock _blitz_mine, accept 'proposal' selection_method, accept integrated_research_loop* protocol name - backend/scripts/seed_canonical_signs.py: seeded 611 canonical signs from INDUS_FINAL_ANCHORS.json and anchor_sets table - scaffold.yml: add verification_tools (backend: pytest, frontend: playwright) - Remove merge conflict resolution helper scripts Co-Authored-By: Oz <oz-agent@warp.dev>
- test_install_gpu.py: add @_skip_gpu_script marker to GPU-001..007
so they skip cleanly when install_gpu.py is absent (GPU machines only)
instead of crashing with ModuleNotFoundError
- test_research_loop_deep.py: fix test_db_persistence_survives_restart
* add all Phase E attrs to manually-constructed ResearchLoop.__new__
(corpus_seqs, high/low/blocker_signs, anchors, cycle_analyses,
max_cycle_timeout, _proposal_engine)
* mock _execute_with_corpus_timeout(template, timeout) to return fast
* mock verify_before_run via glossa_lab.loop_proposal to always pass
(this test verifies DB persistence, not corpus analysis or verify)
- experiment_graph_ab_language.py: remove unused 'math' and 'random' imports
- experiment_graph_cross_culture.py: remove unused 'Any' import
Result: 486 passed (was 8 fail), 9 skipped (was 2), 0 fail
Co-Authored-By: Oz <oz-agent@warp.dev>
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Summary
Five-phase overhaul of Glossa Lab integrating all child agent branches (A-E) into a single tested, release-ready merge.
What changed
Phase A — Cleanup and User-Visible Fixes
Phase B — Automated Insight and Foundation Updates
/api/v1/events/stream) — triggers insight refresh after loop complete, staging archive, discovery fetchPhase C — Experiment Consolidation and New Templates
backend/glossa_lab/experiment_ledger.json+EXPERIMENT_LEDGER.md) — 68-entry catalog of all phase files with category/status/keep-reccontact_zone_kl_v1,contact_zone_synthesis_v1,contact_zone_ab_v1ab_dravidian_vs_sanskrit,ab_dravidian_vs_munda,ab_dravidian_vs_hebrewcross_culture_contact_matrix_v1,script_family_classifier_v1GET /api/v1/experiments/metadataendpointPhase D — Signs and Corpus Analytical Surfaces
GET /api/v1/signs,GET /api/v1/signs/{sign_id},GET /api/v1/signs/summaryPhase E — Integrated Research Loop Upgrade (Propose → Build → Verify → Run → Analyze)
loop_proposal.py: ProposalEngine, build_experiment, verify_before_run, analyze_resultoutputs/partial_loop_result.jsonon any failureBug fixes (discovered during integration)
ai_tools.py:create_job()andcreate_text()were called with positional dicts — fixed to keyword args (was breaking run_pipeline and acquire_corpus actions in production)research_loop.py: restoredaction="staged"support in staging_action endpoint (re-stage / unstage was silently failing)CI status
Backend restart required
New routers registered:
/api/v1/events/stream,/api/v1/foundation/*,/api/v1/signs/*,/api/v1/experiments/metadataNew background task: foundation auto-check (15-min interval)
Conversation · Plan
Co-Authored-By: Oz oz-agent@warp.dev