modify db.update to receive one param {data, collection}

[git-voo]

mongo controller.update() only reads one param, hence, it didn't see the collection passed as second param. For this reason, older projects that contained @type were updated successfully but newer projects aren't.

since we don't want to store type on projects, I'm passing one payload as an object {data, collection}

Followup cleanups are required for all methods currently using db.update() of the mongo controller.

We may also have to optimize the controller methods determineDataType and discernCollectionFromType. This might also lead to their deprecation.

[thehabes]

This is good and we will do an overall refactor for the collection dependency existing in /database/driver.mjs later. Waiting for confirmation of functional from @mepripri then this is good to go.

[mepripri]

The change looks right, able to see the collaborators now

Added to the DB as well.