Clinical-Genomics-Linkoping
- 2 followers
- Core Facility, BKV, Linköping
- https://liu.se/en/article/bioinformatik-vid-core-facility
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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Clinical-Genomics-Linkoping/sarek’s past year of commit activity - methylseq Public Forked from nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
Clinical-Genomics-Linkoping/methylseq’s past year of commit activity - nallo Public
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Clinical-Genomics-Linkoping/Meta-AMR-Plus’s past year of commit activity - scarlet Public Forked from raphael-group/scarlet
SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tumors) is an algorithm that reconstructs tumor phylogenies from single-cell DNA sequencing data. SCARLET uses a loss-supported model that constrains mutation losses based on observed copy-number data.
Clinical-Genomics-Linkoping/scarlet’s past year of commit activity - gms-artic Public Forked from genomic-medicine-sweden/gms-artic
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Clinical-Genomics-Linkoping/gms-artic’s past year of commit activity - gms-JASEN Public
Clinical-Genomics-Linkoping/gms-JASEN’s past year of commit activity
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