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Fix OpenCode R coverage tooling dependencies #172

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Merged
seonghobae merged 1 commit into from
Jun 30, 2026
Merged

Fix OpenCode R coverage tooling dependencies #172

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8 changes: 4 additions & 4 deletions .github/workflows/opencode-review.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -550,11 +550,11 @@ jobs:
}

ensure_r_runtime() {
if command -v Rscript >/dev/null 2>&1; then
if command -v Rscript >/dev/null 2>&1 && dpkg -s libcurl4-openssl-dev libssl-dev libxml2-dev >/dev/null 2>&1; then
return 0
fi
run_and_capture "R runtime install (r-base)" \
bash -c 'sudo apt-get update && sudo apt-get install -y r-base'
run_and_capture "R runtime install (r-base and package headers)" \
bash -c 'sudo apt-get update && sudo apt-get install -y r-base libcurl4-openssl-dev libssl-dev libxml2-dev'
}

run_r_test_coverage() {
Expand All @@ -572,7 +572,7 @@ jobs:
export R_LIBS_USER="${RUNNER_TEMP}/R-library"
mkdir -p "$R_LIBS_USER"
run_and_capture "R coverage tooling (covr/testthat)" \
Rscript -e 'repos <- "https://cloud.r-project.org"; dir.create(Sys.getenv("R_LIBS_USER"), recursive = TRUE, showWarnings = FALSE); .libPaths(c(Sys.getenv("R_LIBS_USER"), .libPaths())); for (pkg in c("covr", "testthat")) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = Sys.getenv("R_LIBS_USER"))'
Rscript -e 'repos <- "https://cloud.r-project.org"; lib <- Sys.getenv("R_LIBS_USER"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = TRUE); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'
if [ -f DESCRIPTION ]; then
run_and_capture "R package coverage with missing-line report" \
Rscript -e 'cov <- covr::package_coverage(); print(cov); zero <- covr::zero_coverage(cov); if (NROW(zero) > 0) { print(zero); stop("R coverage below 100%; add tests for the listed files/lines.") }'
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5 changes: 4 additions & 1 deletion scripts/ci/test_strix_quick_gate.sh
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Expand Up @@ -402,7 +402,10 @@ assert_opencode_review_uses_codegraph_and_gpt5_fallback() {
assert_file_contains "$workflow_file" "Checkout trusted OpenCode review workflow" "opencode review checks out central trusted workflow scripts before processing PR data"
assert_file_contains "$workflow_file" "Checkout trusted OpenCode coverage contract" "opencode coverage job uses central trusted coverage tooling instead of target-repo copies"
assert_file_contains "$workflow_file" 'R_LIBS_USER="${RUNNER_TEMP}/R-library"' "opencode R coverage installs packages into a writable runner user library"
assert_file_contains "$workflow_file" 'install.packages(pkg, repos = repos, lib = Sys.getenv("R_LIBS_USER"))' "opencode R coverage avoids unwritable system R library installs"
assert_file_contains "$workflow_file" 'install.packages(pkg, repos = repos, lib = lib' "opencode R coverage avoids unwritable system R library installs"
assert_file_contains "$workflow_file" "libcurl4-openssl-dev libssl-dev libxml2-dev" "opencode R coverage installs system headers required by covr dependencies"
assert_file_contains "$workflow_file" "dependencies = TRUE" "opencode R coverage installs transitive package dependencies for covr/testthat"
assert_file_contains "$workflow_file" "R coverage tooling packages unavailable after install" "opencode R coverage verifies covr/testthat are loadable after installation"
assert_file_contains "$workflow_file" "repository: ContextualWisdomLab/.github" "opencode required workflow checks out the central source repository"
assert_file_contains "$workflow_file" 'ref: ${{ steps.trusted_source.outputs.ref }}' "opencode required workflow checks out the resolved central ref"
assert_file_contains "$workflow_file" "target_repository:" "opencode workflow_dispatch can target a repository whose PR does not inherit required workflows"
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