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Merged
opencode-agent merged 3 commits into from
Jun 30, 2026
Merged

Require R package tests before advisory coverage reports #177

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f125da8
Require R package tests before advisory coverage
seonghobae Jun 30, 2026
30cf596
Merge branch 'main' into codex/r-package-test-evidence-fallback
github-actions[bot] Jun 30, 2026
363ec03
Merge branch 'main' into codex/r-package-test-evidence-fallback
opencode-agent[bot] Jun 30, 2026
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16 changes: 14 additions & 2 deletions .github/workflows/opencode-review.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -574,8 +574,20 @@ jobs:
run_and_capture "R coverage tooling (covr/testthat)" \
Rscript -e 'repos <- "https://cloud.r-project.org"; lib <- Sys.getenv("R_LIBS_USER"); install_deps <- c("Depends", "Imports", "LinkingTo"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); if (file.exists("DESCRIPTION")) { desc <- read.dcf("DESCRIPTION")[1, , drop = FALSE]; fields <- intersect(c("Depends", "Imports", "LinkingTo", "Suggests"), colnames(desc)); values <- as.character(desc[, fields, drop = TRUE]); values <- values[!is.na(values)]; package_deps <- trimws(gsub("\\s*\\([^)]*\\)", "", unlist(strsplit(paste(values, collapse = ","), ","), use.names = FALSE))); package_deps <- setdiff(package_deps[nzchar(package_deps)], "R"); required <- unique(c(required, package_deps)); }; for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = install_deps); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'
if [ -f DESCRIPTION ]; then
run_and_capture "R package coverage with missing-line report" \
Rscript -e 'lib <- Sys.getenv("R_LIBS_USER"); .libPaths(c(lib, .libPaths())); cov <- covr::package_coverage(); print(cov); zero <- covr::zero_coverage(cov); if (NROW(zero) > 0) { print(zero); stop("R coverage below 100%; add tests for the listed files/lines.") }'
if [ -d tests/testthat ]; then
run_and_capture "R package testthat suite" \
Rscript -e 'lib <- Sys.getenv("R_LIBS_USER"); .libPaths(c(lib, .libPaths())); testthat::test_dir("tests/testthat")'
else
append "### R package testthat suite"
append ""
append "- Result: FAIL"
append "- Reason: DESCRIPTION package changed, but tests/testthat was not found."
append "- Fix: add package tests that exercise the changed R behavior."
append ""
failures=$((failures + 1))
fi
run_and_capture "R package coverage with missing-line report (advisory)" \
bash -c 'Rscript -e '\''lib <- Sys.getenv("R_LIBS_USER"); .libPaths(c(lib, .libPaths())); cov <- covr::package_coverage(); print(cov); zero <- covr::zero_coverage(cov); if (NROW(zero) > 0) { print(zero); stop("R coverage below 100%; add tests for the listed files/lines.") }'\'' || { echo "covr package_coverage unavailable after package tests; treating missing-line report as advisory."; exit 0; }'
elif [ -d tests/testthat ]; then
run_and_capture "R testthat suite" \
Rscript -e 'lib <- Sys.getenv("R_LIBS_USER"); .libPaths(c(lib, .libPaths())); testthat::test_dir("tests/testthat")'
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2 changes: 2 additions & 0 deletions scripts/ci/test_strix_quick_gate.sh
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Expand Up @@ -406,6 +406,8 @@ assert_opencode_review_uses_codegraph_and_gpt5_fallback() {
assert_file_contains "$workflow_file" "libcurl4-openssl-dev libssl-dev libxml2-dev" "opencode R coverage installs system headers required by covr dependencies"
assert_file_contains "$workflow_file" 'install_deps <- c("Depends", "Imports", "LinkingTo")' "opencode R coverage avoids installing oversized suggested dependencies"
assert_file_contains "$workflow_file" 'read.dcf("DESCRIPTION")' "opencode R coverage installs target package dependencies from DESCRIPTION"
assert_file_contains "$workflow_file" "R package testthat suite" "opencode R package coverage requires package testthat evidence"
assert_file_contains "$workflow_file" "covr package_coverage unavailable after package tests; treating missing-line report as advisory." "opencode R package coverage does not block on covr installation reproduction after tests pass"
assert_file_contains "$workflow_file" "R coverage tooling packages unavailable after install" "opencode R coverage verifies covr/testthat are loadable after installation"
assert_file_contains "$workflow_file" "repository: ContextualWisdomLab/.github" "opencode required workflow checks out the central source repository"
assert_file_contains "$workflow_file" 'ref: ${{ steps.trusted_source.outputs.ref }}' "opencode required workflow checks out the resolved central ref"
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