Skip to content

fix(coverage): bound R coverage tooling install so it defers instead of failing (exit 124) #377

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
github-actions merged 2 commits into from
Jul 9, 2026
Merged

fix(coverage): bound R coverage tooling install so it defers instead of failing (exit 124) #377

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
b8932d0
fix(coverage): bound R coverage tooling install so it defers instead …
Jul 8, 2026
4f58a46
Merge branch 'main' into fix/coverage-r-tooling-timeout-defer
opencode-agent[bot] Jul 9, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .github/workflows/opencode-review.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -583,7 +583,7 @@ jobs:
export R_LIBS_USER="${RUNNER_TEMP}/R-library"
mkdir -p "$R_LIBS_USER"
run_and_capture "R coverage tooling (covr/testthat)" \
bash -c 'Rscript -e '\''repos <- "https://cloud.r-project.org"; lib <- Sys.getenv("R_LIBS_USER"); install_deps <- c("Depends", "Imports", "LinkingTo"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); if (file.exists("DESCRIPTION")) { desc <- read.dcf("DESCRIPTION")[1, , drop = FALSE]; fields <- intersect(c("Depends", "Imports", "LinkingTo", "Suggests"), colnames(desc)); values <- as.character(desc[, fields, drop = TRUE]); values <- values[!is.na(values)]; package_deps <- trimws(gsub("\\s*\\([^)]*\\)", "", unlist(strsplit(paste(values, collapse = ","), ","), use.names = FALSE))); package_deps <- setdiff(package_deps[nzchar(package_deps)], "R"); required <- unique(c(required, package_deps)); }; for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = install_deps); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'\'' || { echo "R coverage tooling install unavailable in coverage runner; deferring to required peer R CMD check evidence."; exit 0; }'
bash -c 'timeout 780 Rscript -e '\''user_repo <- "https://cloud.r-project.org"; codename <- tryCatch(sub("[[:space:]]+$", "", system2("lsb_release", "-cs", stdout = TRUE, stderr = FALSE)[1]), error = function(e) ""); if (length(codename) == 1 && !is.na(codename) && nzchar(codename)) { options(HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRversion(), R.version$platform, R.version$arch, R.version$os))); repos <- c(sprintf("https://p3m.dev/cran/__linux__/%s/latest", codename), user_repo) } else { repos <- user_repo }; lib <- Sys.getenv("R_LIBS_USER"); install_deps <- c("Depends", "Imports", "LinkingTo"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); if (file.exists("DESCRIPTION")) { desc <- read.dcf("DESCRIPTION")[1, , drop = FALSE]; fields <- intersect(c("Depends", "Imports", "LinkingTo"), colnames(desc)); values <- as.character(desc[, fields, drop = TRUE]); values <- values[!is.na(values)]; package_deps <- trimws(gsub("\\s*\\([^)]*\\)", "", unlist(strsplit(paste(values, collapse = ","), ","), use.names = FALSE))); package_deps <- setdiff(package_deps[nzchar(package_deps)], "R"); required <- unique(c(required, package_deps)); }; for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = install_deps); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'\'' || { echo "R coverage tooling install unavailable or exceeded the runner time budget; deferring to required peer R CMD check evidence."; exit 0; }'
if [ -f DESCRIPTION ]; then
if [ -d tests/testthat ]; then
run_and_capture "R package testthat suite" \
Expand Down
Loading