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ENH: Check file name suffix for large_image_source_tiff #122

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Merged
Leengit merged 1 commit into from
Mar 28, 2023
Merged

ENH: Check file name suffix for large_image_source_tiff #122

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9 changes: 7 additions & 2 deletions histomics_stream/configure.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,10 @@
import itertools
import itk
import large_image
import large_image_source_tiff as large_image_source
import large_image_source_tiff
import math
import numpy as np
import os
import random
import re
import scipy.interpolate
Expand Down Expand Up @@ -1038,7 +1039,11 @@ def read_large_image(
# ChunkLocations.read_large_image._num_chunks += 1

# print(f"{chunk_name} begin {datetime.datetime.now()}")
ts = large_image_source.open(filename)
ts = (
large_image_source_tiff.open(filename)
if os.path.splitext(filename)[1] in (".tif", ".tiff", ".svs")
else large_image.open(filename)
)
chunk = ts.getRegion(
scale=dict(magnification=returned_magnification),
format=large_image.constants.TILE_FORMAT_NUMPY,
Expand Down