Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to `libfabric` by ocaisa · Pull Request #576 · EESSI/software-layer

ocaisa · 2024-05-15T10:30:41Z

PSM2 was introduced as a dependency of libfabric in easybuilders/easybuild-easyconfigs#20501. We already have PSM2 in the compat layer, so we can filter this dependency out, but longer term we probably actually want it since it should be built with accelerator support.

GROMACS was shipped with an outdated version of gmxapi (which also brings in a new dependency)

`PSM2` was introduced as a dependency of `libfabric` in easybuilders/easybuild-easyconfigs#20501. We already have PSM2 in the compat layer, so we can filter this dependency out, but longer term we probably actually want it since it should be built with accelerator support.

eessi-bot · 2024-05-15T10:30:45Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

eessi-bot · 2024-05-15T10:30:45Z

Instance eessi-bot-mc-azure is configured to build:

arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen4 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen4 for repo eessi.io-2023.06-software

ocaisa · 2024-05-15T10:45:30Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2024-05-15T10:45:33Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 10784, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)

eessi-bot · 2024-05-15T10:45:33Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted

eessi-bot · 2024-05-15T10:45:37Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10784

date	job status	comment
May 15 10:45:36 UTC 2024	submitted	job id `10784` awaits release by job manager
May 15 10:45:40 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 10:50:43 UTC 2024	running	job `10784` is running
May 15 11:33:51 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10784.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1715772559.tar.gz` size: 47 MiB (49825553 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
May 15 11:33:51 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10784.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

ocaisa · 2024-05-15T10:58:57Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

eessi-bot · 2024-05-15T10:58:59Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 10785, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)

eessi-bot · 2024-05-15T10:58:59Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted

eessi-bot · 2024-05-15T10:59:03Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10785

date	job status	comment
May 15 10:59:02 UTC 2024	submitted	job id `10785` awaits release by job manager
May 15 10:59:52 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 11:04:59 UTC 2024	running	job `10785` is running
May 15 11:56:30 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10785.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1715773884.tar.gz` size: 47 MiB (49807004 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
May 15 11:56:30 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10785.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:10:42 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1715773884.tar.gz` to S3 bucket succeeded

ocaisa · 2024-05-15T11:54:19Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-05-15T11:54:21Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 10786, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 10787, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 10788, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 10789, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 10790, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 10791, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 10792, for details & status see Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric #576 (comment)

eessi-bot · 2024-05-15T11:54:22Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-05-15T11:54:26Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10786

date	job status	comment
May 15 11:54:25 UTC 2024	submitted	job id `10786` awaits release by job manager
May 15 11:55:18 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 12:00:42 UTC 2024	running	job `10786` is running
May 15 12:44:01 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10786.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1715776766.tar.gz` size: 42 MiB (44228946 bytes) entries: 980 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
May 15 12:44:01 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10786.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:11:02 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1715776766.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:30Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10787

date	job status	comment
May 15 11:54:29 UTC 2024	submitted	job id `10787` awaits release by job manager
May 15 11:55:16 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 11:59:37 UTC 2024	running	job `10787` is running
May 15 12:51:34 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10787.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1715777088.tar.gz` size: 42 MiB (44465908 bytes) entries: 980 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
May 15 12:51:34 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10787.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:11:22 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1715777088.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:34Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10788

date	job status	comment
May 15 11:54:33 UTC 2024	submitted	job id `10788` awaits release by job manager
May 15 11:55:20 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 11:56:29 UTC 2024	running	job `10788` is running
May 15 12:39:37 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10788.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1715776464.tar.gz` size: 47 MiB (49823018 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
May 15 12:39:37 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10788.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:10:22 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1715776464.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:38Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10789

date	job status	comment
May 15 11:54:37 UTC 2024	submitted	job id `10789` awaits release by job manager
May 15 11:55:24 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 12:02:55 UTC 2024	running	job `10789` is running
May 15 12:56:44 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10789.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1715777475.tar.gz` size: 47 MiB (49833046 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
May 15 12:56:44 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10789.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:11:42 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1715777475.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:42Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10790

date	job status	comment
May 15 11:54:41 UTC 2024	submitted	job id `10790` awaits release by job manager
May 15 11:55:26 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 12:02:57 UTC 2024	running	job `10790` is running
May 15 12:49:27 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10790.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1715777070.tar.gz` size: 46 MiB (49165458 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
May 15 12:49:27 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10790.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:12:03 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1715777070.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:46Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10791

date	job status	comment
May 15 11:54:45 UTC 2024	submitted	job id `10791` awaits release by job manager
May 15 11:55:22 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 12:02:53 UTC 2024	running	job `10791` is running
May 15 12:54:41 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10791.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1715777300.tar.gz` size: 44 MiB (47022993 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/generic/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
May 15 12:54:41 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10791.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:12:23 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1715777300.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-05-15T11:54:50Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_576/10792

date	job status	comment
May 15 11:54:49 UTC 2024	submitted	job id `10792` awaits release by job manager
May 15 11:55:15 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 11:59:35 UTC 2024	running	job `10792` is running
May 15 12:51:33 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10792.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1715777052.tar.gz` size: 37 MiB (39156413 bytes) entries: 980 modules under 2023.06/software/linux/aarch64/generic/modules/all `GROMACS/2024.1-foss-2023b.lua` `scikit-build-core/0.9.3-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `GROMACS/2024.1-foss-2023b` `scikit-build-core/0.9.3-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
May 15 12:51:33 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10792.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 15 16:12:42 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1715777052.tar.gz` to S3 bucket succeeded

Issues seen when trying to use `from-commit` in EESSI#577

ocaisa added 2 commits May 15, 2024 12:10

Update configure_easybuild

ec2e8bd

ocaisa mentioned this pull request May 15, 2024

Add PSM2 to filtered dependencies for 2023.06 #575

Closed

Add a rebuild of GROMACS

3cdb7b2

Also add new dependency on scikit-build-core

fb329a4

ocaisa mentioned this pull request May 15, 2024

Only correct the Zen4 software subdirectory if it has not been overridden #573

Merged

ocaisa changed the title ~~Fix check for missing installations after updates upstream in EasyBuild~~ Fix CI: Rebuild GROMACS, and fix check for missing installations after updates upstream to libfabric May 15, 2024

ocaisa added the ready-to-deploy Mark a PR as ready to deploy label May 15, 2024

ocaisa added 2 commits May 15, 2024 15:01

Use from-commit for merged PRs

792ea3e

Update 20240515-eb-4.9.1-GROMACS-correct-gmxapi-version.yml

375bf37

Issues seen when trying to use `from-commit` in EESSI#577

ocaisa mentioned this pull request May 15, 2024

Test 550 with GROMACS rebuild in #576 #577

Closed

trz42 added the bot:deploy Ask bot to deploy missing software installations to EESSI label May 15, 2024

trz42 mentioned this pull request May 15, 2024

add psm2 to filter-deps and rebuild GROMACS NorESSI/software-layer#361

Merged

boegel approved these changes May 16, 2024

View reviewed changes

boegel merged commit 2dd2015 into EESSI:2023.06-software.eessi.io May 16, 2024

boegel added 2023.06-software.eessi.io 2023.06 version of software.eessi.io and removed ready-to-deploy Mark a PR as ready to deploy labels Jun 6, 2024

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