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Added various fixes for hybrid height coordinates#562

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mattiarighi merged 9 commits into
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fix_hybrid_height
Apr 1, 2020
Merged

Added various fixes for hybrid height coordinates#562
mattiarighi merged 9 commits into
masterfrom
fix_hybrid_height

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@schlunma

@schlunma schlunma commented Mar 9, 2020 •
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This PR adds fixes for cl, cli and clw datasets with a hybrid height coordinate.

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  • Create an issue to discuss what you are going to do, if you haven't done so already (and add the link at the bottom)
  • This pull request has a descriptive title that can be used in a changelog
  • Add unit tests
  • Public functions should have a numpy-style docstring so they appear properly in the API documentation. For all other functions a one line docstring is sufficient.
  • If writing a new/modified preprocessor function, please update the documentation
  • Circle/CI tests pass. Status can be seen below your pull request. If the tests are failing, click the link to find out why.
  • Codacy code quality checks pass. Status can be seen below your pull request. If there is an error, click the link to find out why. If you suspect Codacy may be wrong, please ask by commenting.
  • Please use yamllint to check that your YAML files do not contain mistakes
  • If you make backward incompatible changes to the recipe format, make a new pull request in the ESMValTool repository and add the link below

If you need help with any of the tasks above, please do not hesitate to ask by commenting in the issue or pull request.

Related to #537. (Note: Automatic closing of these issues is not desired; they should be closed when the issue is reported to the modelers).

@schlunma schlunma added the fix for dataset Related to dataset-specific fix files label Mar 9, 2020
@schlunma schlunma requested review from valeriupredoi and zklaus March 9, 2020 15:47
@schlunma schlunma self-assigned this Mar 9, 2020
@schlunma schlunma mentioned this pull request Mar 9, 2020
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@schlunma schlunma added this to the ESMValTool papers milestone Mar 10, 2020
valeriupredoi
valeriupredoi approved these changes Mar 11, 2020
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Holy cheese, there are a lot of fixes here - well done, man! One comment: it would be very useful if we documented proper all funcs in esmvalcore/cmor/_fixes/shared.py so that they can be used via the API - not necessarily here, but we should have that in mind (open an issue) for the future 🍺

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@schlunma schlunma force-pushed the fix_hybrid_height branch from 7a4c16c to 8a1efb8 Compare March 12, 2020 16:28
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@schlunma schlunma requested a review from valeriupredoi March 13, 2020 13:36
@schlunma schlunma mentioned this pull request Mar 16, 2020
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@bouweandela bouweandela self-requested a review March 24, 2020 20:49
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@schlunma schlunma force-pushed the fix_hybrid_height branch from 0079f85 to 9311e21 Compare March 25, 2020 15:43
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schlunma commented Mar 25, 2020

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@bouweandela I implemented your suggestion and refactored the code again (hopefully for the last time now). Can you take another look at it? Thanks!

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schlunma commented Mar 31, 2020

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@bouweandela I implemented your suggestion and refactored the code again (hopefully for the last time now). Can you take another look at it? Thanks!

@bouweandela? Sorry for the hurry, but I really need this for a diagnostic used in Axel's paper 😬

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Code looks good to me apart from some very minor suggestions, but I would really like a review of @zklaus or @jvegasbsc as well, because I'm no expert on the cf-conventions.

Comment thread esmvalcore/cmor/_fixes/shared.py Outdated
return func


ALTITUDE_TO_PRESSURE = _get_altitude_to_pressure_func()

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Comment thread esmvalcore/cmor/_fixes/shared.py Outdated
List of cubes which contains the desired coordinate bounds as single
cubes.
coord_var_names : list of str
``var_name``s of the desired coordinates (without suffic ``_bnds`` or

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@bouweandela bouweandela requested a review from jvegreg March 31, 2020 10:00
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jvegreg approved these changes Mar 31, 2020
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As @bouweandela said, code looks good. I am a bit lost with atmosphere hybrid coordinates, so I can not provide any more comments

@mattiarighi mattiarighi merged commit 6624825 into master Apr 1, 2020
@mattiarighi mattiarighi deleted the fix_hybrid_height branch April 1, 2020 12:35
@bouweandela bouweandela mentioned this pull request Apr 2, 2020
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@bouweandela bouweandela bouweandela approved these changes
@jvegreg jvegreg jvegreg approved these changes
@zklaus zklaus Awaiting requested review from zklaus
@valeriupredoi valeriupredoi Awaiting requested review from valeriupredoi

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fix for dataset Related to dataset-specific fix files

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