Secret refactor

[TylerMizuyabu]

Refactors how organization secrets can be managed.

The process to create secrets is now as follows:

1. User defines all secrets they want to make in the organization module
2. In the repository set module user's can define what organization level secrets with visibility level 'select' a repo has access to

This avoids naming collision and allows the use of select without having to make the repository set module a dependancy of the organization module