Calado-SignatureDB

Gene Signature Collection used in Calado-Lab

Details regarding where and how each signature is obtained can be found in the Excel Sheet here.

Data Availability

Data is available on both DropBox and NEMO at /nemo/lab/caladod/working/Shared/Calado-SignatureDB.

Relevant Directories:

Calado-SignatureDB/
├── releases/v0.0.4                   # Official SignatureDB release versions
|   ├── external.gmt                          ## All gene sets compiled from external sources, stored in GMT file
|   └── internal.gmt                          ## All gene sets compiled from internal sources, stored in GMT file
├── external/gmt/                    ## Individual GMT files from external sources
└── internal/gmt/                    ## Individual GMT files from internal sources

Suffix Dictionary

_UP = all upregulated genes
_DN = all downregulated genes
_TOP50 = top 50 upregulated genes