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GabrielFalque/README.md

Hi there, I'm Gabriel Falque πŸ‘‹

Genomic Data Scientist | Bioinformatics Engineer πŸ§¬πŸ”¬

Open to new opportunities while continuing remote collaborations on public health projects with CIRMF. My work focuses on automating genomic surveillance, analyzing viral evolution, and modeling epidemiological trends using satellite data (One Health).


πŸ”­ Current Focus

  • Genomic Surveillance: Analyzing 173k+ SARS-CoV-2 genomes to track viral evolution across Africa.
  • One Health Modeling: Coupling clinical datasets with environmental variables via Google Earth Engine.
  • Tool Development: Building Python packages for codon usage bias analysis pycodon_analyzer.

πŸ“ Selected Publications & Contributions

  • [2026] Conformational dynamics study of TfR1 upon transferrin binding via NMA and MD simulations - Journal of Molecular Graphics and Modelling. DOI: 10.1016/j.jmgm.2026.109379
  • [2025] Morphological and MALDI-TOF MS identification of freshwater snails, including intermediate hosts of schistosomes in Gabon - bioRxiv (Preprint). DOI: 10.1101/2025.07.14.664644

πŸ› οΈ Tech Stack & Tools

Languages Python R Bash Java LaTeX

Bioinformatics & Data Science Pandas Nextflow Docker Google Earth Engine Linux


πŸ“Š GitHub Stats

Gabriel's GitHub Stats Top Languages

πŸ“« Connect with me

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  1. pycodon_analyzer pycodon_analyzer Public

    Python tool to compute codons usage.

    Python

  2. fasta_tools fasta_tools Public

    A collection of Python scripts for common bioinformatics tasks involving FASTA files.

    Python