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gpas auth subcommand to allow windowed IDCS login and token retrieval without accessing GPAS portal

enhancementNew feature or requestNew feature or request

Status: Open.

#115 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Jan 26, 2023

PyInstaller builds failing with PyInstaller >= 5.6.2

Status: Open.

#114 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Jan 23, 2023

cli 0.8.4 - "cannot pickle '_thread.RLock' object" error when uploading samples with 10 parallel connections

Status: Open.

#112 In GlobalPathogenAnalysisService/gpas-cli;

· KuzminaAnna opened on Jan 23, 2023

Add relatedness subcommand

enhancementNew feature or requestNew feature or request

Status: Open.

#110 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Jan 5, 2023

Tests: properly clear up lingering mapping CSVs created during testing

Status: Open.

#109 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Dec 15, 2022

EC 1.1.4 with gpas-cli 0.6.0 - Error message "unauthorised for this user" appears for invalid tags

blocked

Status: Open.

#101 In GlobalPathogenAnalysisService/gpas-cli;

· KuzminaAnna opened on Nov 24, 2022

EC 1.1.4 : User is only able to upload samples if tags assigned to user has access flag set to yes

blocked

Status: Open.

#99 In GlobalPathogenAnalysisService/gpas-cli;

· KuzminaAnna opened on Nov 24, 2022

Make mapping CSV creation more testable

Status: Open.

#98 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Nov 18, 2022

Eelectron Client : "fastq file does not exist" error message appears, even if fastq exists

blocked

cannot reproduce

Status: Open.

#96 In GlobalPathogenAnalysisService/gpas-cli;

· KuzminaAnna opened on Nov 17, 2022

Migrate to latest Pandera

Status: Open.

#91 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Nov 9, 2022

Add new file types available from revised get_output API

Status: Open.

#89 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Oct 31, 2022

Move Docker images to GHCR

Status: Open.

#84 In GlobalPathogenAnalysisService/gpas-cli;

· bede opened on Oct 12, 2022