Castaway - random arborescence sampler

Implementation of the Castaway algorithm for sampling random arborescences from Zampinetti et al. 2025 (preprint)

Changelog

• 0.0.4 (2025-04-14) added final version for handling weakly connected components (Castaway2RST in castaway_reboot.py)

Requirements

Use Python >= 3.10 for the best compatibility. Required packages are listed in the requirements.txt file. Install them with pip:

Installation

Install the package through pip with (setuptools required)

pip install -e .

alternatively, without cloning the repository:

pip install git+https://github.com/Lagergren-Lab/treesampling