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| f"Error reading sample sheet from {snakemake.params['sample_sheet']}: {e}\n" | ||
| ) | ||
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| df_samples["file"] = df_samples["file"].apply(lambda x: os.path.basename(x)) |
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this script produced an error for me because my sample names are numbers, which is not not something completely out of the ordinary. Here we need to add type coercion to make this robust, add line:
df_samples["sample"] = df_samples["sample"].apply(lambda x: str(x))
| rsync ./ntSynt.* {params.outdir}/; | ||
| rsync ./ntSynt-viz.* {params.outdir}/; | ||
| rsync ./ntSynt-viz_* {params.outdir}/; |
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why rsync and not just cp or mv? Isn't rsync another dependency which would be unnecessary just to copy files?
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