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Add docs for BioImage.IO: finding & sharing models#1011

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carsen-stringer merged 3 commits intoMouseLand:mainfrom
qin-yu:bioimageio-docs
Sep 13, 2024
Merged

Add docs for BioImage.IO: finding & sharing models#1011
carsen-stringer merged 3 commits intoMouseLand:mainfrom
qin-yu:bioimageio-docs

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@qin-yu qin-yu commented Sep 12, 2024

53aa2dc adds blurbs for finding and exporting Cellpose models on BioImage.IO, extending #988. I aimed to make it clear and informative without copying docstrings. A checklist is included along with usage in --help and link to an example in the docstring for easy start.

I noticed some inconsistencies in doc file line widths, and I kept auto-formatting to improve readability in 3445bc7

Automatic formatting changes by Rewrap (stkb) have been staged separately to avoid unintended modifications to the codebase. Feel free to review and revert if preferred.
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codecov bot commented Sep 12, 2024

Codecov Report

Attention: Patch coverage is 0% with 1 line in your changes missing coverage. Please review.

Project coverage is 53.17%. Comparing base (3445bc7) to head (a70f773).
Report is 4 commits behind head on main.

Files with missing lines Patch % Lines
cellpose/export.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1011      +/-   ##
==========================================
- Coverage   53.64%   53.17%   -0.48%     
==========================================
  Files          18       18              
  Lines        4138     4139       +1     
==========================================
- Hits         2220     2201      -19     
- Misses       1918     1938      +20     

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qin-yu commented Sep 12, 2024

I just double-checked the definition of a "blurb" : ) The exporting section goes a bit beyond the usual 200-word limit. Let me know if you'd prefer adjustments to the length or formatting.

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hah no longer is always better thank you so much!

@carsen-stringer carsen-stringer merged commit c7d093b into MouseLand:main Sep 13, 2024
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