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Update DocumenterVitepress (v0.2 changes)#463

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tpoisot wants to merge 12 commits intomainfrom
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Update DocumenterVitepress (v0.2 changes)#463
tpoisot wants to merge 12 commits intomainfrom
sdt/doc/vitepress0.2

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@tpoisot
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@tpoisot tpoisot commented Jun 20, 2025 •
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Closes #462

⚠️ the process to remove links isn't super clear, not moving forward with this until this is solved

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github-actions bot commented Jun 20, 2025

Documentation websites for this pull request
📦 SpeciesDistributionToolkit
🌿 GBIF
📊 Fauxcurrences
🐾 OccurrencesInterface
🗺 SimpleSDMLayers
❇️ SimpleSDMPolygons
💾 SimpleSDMDatasets
✏️ Phylopic
🕳️ PseudoAbsences
🧠 SDeMo

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Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 20 Jun 2025 - 21:47
    • Baseline: 20 Jun 2025 - 21:49
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.11 (5%) ❌ 1.00 (1%)
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 1.05 (5%) 1.03 (1%) ❌
["SDeMo", "splits", "montecarlo"] 1.06 (5%) ❌ 1.00 (1%)
["SDeMo", "train", "random forest"] 1.09 (5%) ❌ 1.03 (1%) ❌
["SDeMo", "train", "rotation forest"] 1.09 (5%) ❌ 1.03 (1%) ❌

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1620 s          0 s        137 s       2599 s          0 s
       #2     0 MHz       1695 s          0 s        140 s       2527 s          0 s
       #3     0 MHz       2162 s          0 s        127 s       2074 s          0 s
       #4     0 MHz       2450 s          0 s        130 s       1775 s          0 s
  Memory: 15.620769500732422 GB (13822.84765625 MB free)
  Uptime: 438.0 sec
  Load Avg:  1.29  1.66  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2131 s          0 s        147 s       3007 s          0 s
       #2     0 MHz       2049 s          0 s        150 s       3091 s          0 s
       #3     0 MHz       2169 s          0 s        130 s       2992 s          0 s
       #4     0 MHz       2496 s          0 s        133 s       2653 s          0 s
  Memory: 15.620769500732422 GB (13856.92578125 MB free)
  Uptime: 530.89 sec
  Load Avg:  1.06  1.47  0.9
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 21:47
  • Package commit: 43b1507
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 259.130 ms (5%) 17.113 ms 192.55 MiB (1%) 355986
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 333.027 ms (5%) 17.549 ms 182.45 MiB (1%) 391176
["SDeMo", "splits", "LOO"] 70.539 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 562.828 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.399 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 497.917 ms (5%) 21.798 ms 238.70 MiB (1%) 661135
["SDeMo", "train", "rotation forest"] 320.047 ms (5%) 20.745 ms 251.44 MiB (1%) 632236
["SimpleSDMLayers", "mosaic"] 891.675 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.412 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.424 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.100 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1620 s          0 s        137 s       2599 s          0 s
       #2     0 MHz       1695 s          0 s        140 s       2527 s          0 s
       #3     0 MHz       2162 s          0 s        127 s       2074 s          0 s
       #4     0 MHz       2450 s          0 s        130 s       1775 s          0 s
  Memory: 15.620769500732422 GB (13822.84765625 MB free)
  Uptime: 438.0 sec
  Load Avg:  1.29  1.66  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 21:49
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 234.007 ms (5%) 15.077 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 317.266 ms (5%) 9.743 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 73.247 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 578.848 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.004 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 458.119 ms (5%) 7.162 ms 231.82 MiB (1%) 641255
["SDeMo", "train", "rotation forest"] 292.635 ms (5%) 20.601 ms 243.17 MiB (1%) 607652
["SimpleSDMLayers", "mosaic"] 894.531 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.400 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.423 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.132 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2131 s          0 s        147 s       3007 s          0 s
       #2     0 MHz       2049 s          0 s        150 s       3091 s          0 s
       #3     0 MHz       2169 s          0 s        130 s       2992 s          0 s
       #4     0 MHz       2496 s          0 s        133 s       2653 s          0 s
  Memory: 15.620769500732422 GB (13856.92578125 MB free)
  Uptime: 530.89 sec
  Load Avg:  1.06  1.47  0.9
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.85
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions
Copy link
Contributor

github-actions bot commented Jun 20, 2025

Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 20 Jun 2025 - 22:38
    • Baseline: 20 Jun 2025 - 22:40
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.03 (5%) 0.99 (1%) ✅
["SDeMo", "train", "random forest"] 0.94 (5%) ✅ 0.99 (1%) ✅
["SDeMo", "train", "rotation forest"] 0.90 (5%) ✅ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1904 s          0 s        136 s       5571 s          0 s
       #2     0 MHz       1866 s          0 s        141 s       5608 s          0 s
       #3     0 MHz       2217 s          0 s        135 s       5258 s          0 s
       #4     0 MHz       2421 s          0 s        150 s       5043 s          0 s
  Memory: 15.620769500732422 GB (13748.44140625 MB free)
  Uptime: 764.06 sec
  Load Avg:  1.14  1.63  0.92
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2344 s          0 s        146 s       6061 s          0 s
       #2     0 MHz       2322 s          0 s        150 s       6083 s          0 s
       #3     0 MHz       2222 s          0 s        138 s       6187 s          0 s
       #4     0 MHz       2449 s          0 s        156 s       5947 s          0 s
  Memory: 15.620769500732422 GB (13833.921875 MB free)
  Uptime: 858.03 sec
  Load Avg:  1.03  1.46  0.93
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:38
  • Package commit: 06214f6
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 257.671 ms (5%) 18.333 ms 189.34 MiB (1%) 349373
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 323.154 ms (5%) 6.720 ms 177.04 MiB (1%) 378967
["SDeMo", "splits", "LOO"] 71.232 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 630.829 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.934 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 456.246 ms (5%) 7.830 ms 235.54 MiB (1%) 653418
["SDeMo", "train", "rotation forest"] 284.002 ms (5%) 5.685 ms 240.60 MiB (1%) 600659
["SimpleSDMLayers", "mosaic"] 927.474 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.384 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.420 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.088 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1904 s          0 s        136 s       5571 s          0 s
       #2     0 MHz       1866 s          0 s        141 s       5608 s          0 s
       #3     0 MHz       2217 s          0 s        135 s       5258 s          0 s
       #4     0 MHz       2421 s          0 s        150 s       5043 s          0 s
  Memory: 15.620769500732422 GB (13748.44140625 MB free)
  Uptime: 764.06 sec
  Load Avg:  1.14  1.63  0.92
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:40
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 249.555 ms (5%) 16.183 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 323.483 ms (5%) 3.961 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 73.553 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 624.797 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.646 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 485.859 ms (5%) 25.505 ms 238.75 MiB (1%) 656771
["SDeMo", "train", "rotation forest"] 314.192 ms (5%) 6.463 ms 240.24 MiB (1%) 601776
["SimpleSDMLayers", "mosaic"] 915.681 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.382 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.418 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.097 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2344 s          0 s        146 s       6061 s          0 s
       #2     0 MHz       2322 s          0 s        150 s       6083 s          0 s
       #3     0 MHz       2222 s          0 s        138 s       6187 s          0 s
       #4     0 MHz       2449 s          0 s        156 s       5947 s          0 s
  Memory: 15.620769500732422 GB (13833.921875 MB free)
  Uptime: 858.03 sec
  Load Avg:  1.03  1.46  0.93
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.86
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions
Copy link
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github-actions bot commented Jun 20, 2025

Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 20 Jun 2025 - 22:42
    • Baseline: 20 Jun 2025 - 22:43
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.03 (5%) 1.02 (1%) ❌
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 1.05 (5%) ❌ 1.00 (1%)
["SDeMo", "train", "random forest"] 1.06 (5%) ❌ 1.00 (1%)
["SDeMo", "train", "rotation forest"] 1.02 (5%) 0.95 (1%) ✅

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1811 s          0 s        136 s       2285 s          0 s
       #2     0 MHz       2398 s          0 s        151 s       1685 s          0 s
       #3     0 MHz       1586 s          0 s        132 s       2514 s          0 s
       #4     0 MHz       2141 s          0 s        124 s       1966 s          0 s
  Memory: 15.620769500732422 GB (13698.11328125 MB free)
  Uptime: 425.38 sec
  Load Avg:  1.16  1.6  0.87
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1818 s          0 s        140 s       3200 s          0 s
       #2     0 MHz       2423 s          0 s        156 s       2579 s          0 s
       #3     0 MHz       2035 s          0 s        143 s       2981 s          0 s
       #4     0 MHz       2575 s          0 s        131 s       2452 s          0 s
  Memory: 15.620769500732422 GB (13800.1328125 MB free)
  Uptime: 518.08 sec
  Load Avg:  1.03  1.43  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:42
  • Package commit: cf1b72f
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 233.870 ms (5%) 7.823 ms 195.96 MiB (1%) 362439
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 312.227 ms (5%) 16.314 ms 176.79 MiB (1%) 378272
["SDeMo", "splits", "LOO"] 74.750 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 565.154 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 6.887 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 452.489 ms (5%) 19.931 ms 231.23 MiB (1%) 633650
["SDeMo", "train", "rotation forest"] 258.833 ms (5%) 6.030 ms 232.90 MiB (1%) 584164
["SimpleSDMLayers", "mosaic"] 916.955 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.388 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.424 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.127 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1811 s          0 s        136 s       2285 s          0 s
       #2     0 MHz       2398 s          0 s        151 s       1685 s          0 s
       #3     0 MHz       1586 s          0 s        132 s       2514 s          0 s
       #4     0 MHz       2141 s          0 s        124 s       1966 s          0 s
  Memory: 15.620769500732422 GB (13698.11328125 MB free)
  Uptime: 425.38 sec
  Load Avg:  1.16  1.6  0.87
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:43
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 226.077 ms (5%) 16.432 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 296.951 ms (5%) 3.685 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 73.684 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 560.394 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.024 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 428.130 ms (5%) 16.242 ms 230.98 MiB (1%) 639058
["SDeMo", "train", "rotation forest"] 254.758 ms (5%) 10.161 ms 244.64 MiB (1%) 613831
["SimpleSDMLayers", "mosaic"] 917.016 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.405 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.415 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.094 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1818 s          0 s        140 s       3200 s          0 s
       #2     0 MHz       2423 s          0 s        156 s       2579 s          0 s
       #3     0 MHz       2035 s          0 s        143 s       2981 s          0 s
       #4     0 MHz       2575 s          0 s        131 s       2452 s          0 s
  Memory: 15.620769500732422 GB (13800.1328125 MB free)
  Uptime: 518.08 sec
  Load Avg:  1.03  1.43  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.85
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions
Copy link
Contributor

github-actions bot commented Jun 20, 2025

Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 20 Jun 2025 - 22:51
    • Baseline: 20 Jun 2025 - 22:52
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.13 (5%) ❌ 0.94 (1%) ✅
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 1.00 (5%) 0.97 (1%) ✅
["SDeMo", "train", "random forest"] 0.95 (5%) 1.03 (1%) ❌
["SDeMo", "train", "rotation forest"] 1.07 (5%) ❌ 0.93 (1%) ✅

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2247 s          0 s        136 s       2470 s          0 s
       #2     0 MHz       2365 s          0 s        147 s       2350 s          0 s
       #3     0 MHz       1694 s          0 s        125 s       3039 s          0 s
       #4     0 MHz       1537 s          0 s        130 s       3187 s          0 s
  Memory: 15.620769500732422 GB (13744.67578125 MB free)
  Uptime: 487.98 sec
  Load Avg:  1.17  1.61  0.86
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2632 s          0 s        143 s       2995 s          0 s
       #2     0 MHz       2842 s          0 s        157 s       2781 s          0 s
       #3     0 MHz       1705 s          0 s        130 s       3940 s          0 s
       #4     0 MHz       1572 s          0 s        133 s       4064 s          0 s
  Memory: 15.620769500732422 GB (13705.92578125 MB free)
  Uptime: 579.73 sec
  Load Avg:  1.04  1.45  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:51
  • Package commit: ad1684c
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 242.217 ms (5%) 13.016 ms 180.69 MiB (1%) 332471
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 308.274 ms (5%) 171.89 MiB (1%) 368509
["SDeMo", "splits", "LOO"] 72.702 ms (5%) 2.039 ms 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 550.759 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 6.900 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 443.435 ms (5%) 6.977 ms 242.03 MiB (1%) 673317
["SDeMo", "train", "rotation forest"] 293.345 ms (5%) 16.729 ms 235.14 MiB (1%) 585346
["SimpleSDMLayers", "mosaic"] 890.096 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.396 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.411 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.082 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2247 s          0 s        136 s       2470 s          0 s
       #2     0 MHz       2365 s          0 s        147 s       2350 s          0 s
       #3     0 MHz       1694 s          0 s        125 s       3039 s          0 s
       #4     0 MHz       1537 s          0 s        130 s       3187 s          0 s
  Memory: 15.620769500732422 GB (13744.67578125 MB free)
  Uptime: 487.98 sec
  Load Avg:  1.17  1.61  0.86
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 20 Jun 2025 - 22:52
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 214.831 ms (5%) 13.314 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 308.780 ms (5%) 12.439 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 71.750 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 546.882 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 6.816 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 466.534 ms (5%) 15.247 ms 235.52 MiB (1%) 648899
["SDeMo", "train", "rotation forest"] 274.172 ms (5%) 6.624 ms 252.59 MiB (1%) 632768
["SimpleSDMLayers", "mosaic"] 884.453 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.409 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.418 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.078 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2632 s          0 s        143 s       2995 s          0 s
       #2     0 MHz       2842 s          0 s        157 s       2781 s          0 s
       #3     0 MHz       1705 s          0 s        130 s       3940 s          0 s
       #4     0 MHz       1572 s          0 s        133 s       4064 s          0 s
  Memory: 15.620769500732422 GB (13705.92578125 MB free)
  Uptime: 579.73 sec
  Load Avg:  1.04  1.45  0.88
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.85
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions
Copy link
Contributor

github-actions bot commented Jun 21, 2025

Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 21 Jun 2025 - 01:44
    • Baseline: 21 Jun 2025 - 01:46
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.06 (5%) ❌ 0.89 (1%) ✅
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 1.01 (5%) 0.97 (1%) ✅
["SDeMo", "train", "random forest"] 1.03 (5%) 1.02 (1%) ❌
["SDeMo", "train", "rotation forest"] 0.97 (5%) 1.01 (1%) ❌

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2181 s          0 s        133 s       1912 s          0 s
       #2     0 MHz       2215 s          0 s        143 s       1868 s          0 s
       #3     0 MHz       1814 s          0 s        144 s       2271 s          0 s
       #4     0 MHz       1699 s          0 s        119 s       2400 s          0 s
  Memory: 15.620769500732422 GB (13708.80859375 MB free)
  Uptime: 424.86 sec
  Load Avg:  1.18  1.67  0.91
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2756 s          0 s        142 s       2252 s          0 s
       #2     0 MHz       2499 s          0 s        152 s       2499 s          0 s
       #3     0 MHz       1836 s          0 s        148 s       3168 s          0 s
       #4     0 MHz       1732 s          0 s        122 s       3287 s          0 s
  Memory: 15.620769500732422 GB (13695.18359375 MB free)
  Uptime: 517.37 sec
  Load Avg:  1.03  1.48  0.92
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 21 Jun 2025 - 01:44
  • Package commit: 1ee8705
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 240.621 ms (5%) 5.292 ms 169.94 MiB (1%) 310403
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 314.113 ms (5%) 13.681 ms 171.79 MiB (1%) 365068
["SDeMo", "splits", "LOO"] 71.575 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 582.858 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.152 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 460.006 ms (5%) 6.951 ms 233.47 MiB (1%) 643633
["SDeMo", "train", "rotation forest"] 272.215 ms (5%) 22.783 ms 247.06 MiB (1%) 619732
["SimpleSDMLayers", "mosaic"] 924.166 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.497 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.424 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.191 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2181 s          0 s        133 s       1912 s          0 s
       #2     0 MHz       2215 s          0 s        143 s       1868 s          0 s
       #3     0 MHz       1814 s          0 s        144 s       2271 s          0 s
       #4     0 MHz       1699 s          0 s        119 s       2400 s          0 s
  Memory: 15.620769500732422 GB (13708.80859375 MB free)
  Uptime: 424.86 sec
  Load Avg:  1.18  1.67  0.91
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 21 Jun 2025 - 01:46
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 227.008 ms (5%) 15.018 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 311.153 ms (5%) 11.838 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 72.794 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 586.144 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.198 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 445.995 ms (5%) 11.686 ms 228.30 MiB (1%) 623680
["SDeMo", "train", "rotation forest"] 279.965 ms (5%) 12.774 ms 243.52 MiB (1%) 614728
["SimpleSDMLayers", "mosaic"] 894.951 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.502 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.421 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.178 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       2756 s          0 s        142 s       2252 s          0 s
       #2     0 MHz       2499 s          0 s        152 s       2499 s          0 s
       #3     0 MHz       1836 s          0 s        148 s       3168 s          0 s
       #4     0 MHz       1732 s          0 s        122 s       3287 s          0 s
  Memory: 15.620769500732422 GB (13695.18359375 MB free)
  Uptime: 517.37 sec
  Load Avg:  1.03  1.48  0.92
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.87
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions
Copy link
Contributor

github-actions bot commented Jun 21, 2025

Benchmark result

Judge result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmarks:
    • Target: 21 Jun 2025 - 02:05
    • Baseline: 21 Jun 2025 - 02:06
  • Package commits:
  • Julia commits:
    • Target: 760b2e5
    • Baseline: 760b2e5
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Brackets display tolerances for the benchmark estimates. Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["SDeMo", "crossvalidate", "pca - decisiontree"] 1.03 (5%) 0.99 (1%) ✅
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 0.95 (5%) ✅ 0.99 (1%) ✅
["SDeMo", "train", "random forest"] 0.95 (5%) 0.97 (1%) ✅
["SDeMo", "train", "rotation forest"] 0.98 (5%) 1.03 (1%) ❌
["SimpleSDMLayers", "rescale"] 0.95 (5%) ✅ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Target

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1581 s          0 s        146 s       2518 s          0 s
       #2     0 MHz       1527 s          0 s        133 s       2592 s          0 s
       #3     0 MHz       2196 s          0 s        121 s       1933 s          0 s
       #4     0 MHz       2482 s          0 s        132 s       1629 s          0 s
  Memory: 15.620769500732422 GB (13750.35546875 MB free)
  Uptime: 426.97 sec
  Load Avg:  1.25  1.71  0.94
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1589 s          0 s        151 s       3416 s          0 s
       #2     0 MHz       1560 s          0 s        136 s       3468 s          0 s
       #3     0 MHz       2404 s          0 s        130 s       2628 s          0 s
       #4     0 MHz       3135 s          0 s        141 s       1880 s          0 s
  Memory: 15.620769500732422 GB (13681.90625 MB free)
  Uptime: 518.27 sec
  Load Avg:  1.05  1.52  0.94
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 21 Jun 2025 - 02:05
  • Package commit: 75dca2c
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 226.359 ms (5%) 6.275 ms 188.98 MiB (1%) 348097
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 300.230 ms (5%) 5.590 ms 175.47 MiB (1%) 374800
["SDeMo", "splits", "LOO"] 70.170 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 552.875 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 6.861 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 436.520 ms (5%) 6.979 ms 234.69 MiB (1%) 644601
["SDeMo", "train", "rotation forest"] 270.679 ms (5%) 6.875 ms 248.63 MiB (1%) 629097
["SimpleSDMLayers", "mosaic"] 916.186 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.389 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.410 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.105 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1581 s          0 s        146 s       2518 s          0 s
       #2     0 MHz       1527 s          0 s        133 s       2592 s          0 s
       #3     0 MHz       2196 s          0 s        121 s       1933 s          0 s
       #4     0 MHz       2482 s          0 s        132 s       1629 s          0 s
  Memory: 15.620769500732422 GB (13750.35546875 MB free)
  Uptime: 426.97 sec
  Load Avg:  1.25  1.71  0.94
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/SpeciesDistributionToolkit.jl/SpeciesDistributionToolkit.jl

Job Properties

  • Time of benchmark: 21 Jun 2025 - 02:06
  • Package commit: 074d436
  • Julia commit: 760b2e5
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["SDeMo", "crossvalidate", "pca - decisiontree"] 219.479 ms (5%) 12.874 ms 191.64 MiB (1%) 354070
["SDeMo", "crossvalidate", "rawdata - decisiontree"] 316.914 ms (5%) 11.946 ms 177.58 MiB (1%) 379508
["SDeMo", "splits", "LOO"] 71.064 ms (5%) 84.11 MiB (1%) 20782
["SDeMo", "splits", "kfold"] 558.597 μs (5%) 674.32 KiB (1%) 378
["SDeMo", "splits", "montecarlo"] 7.003 ms (5%) 8.48 MiB (1%) 3302
["SDeMo", "train", "random forest"] 457.561 ms (5%) 6.700 ms 241.53 MiB (1%) 670107
["SDeMo", "train", "rotation forest"] 275.344 ms (5%) 6.060 ms 241.79 MiB (1%) 605245
["SimpleSDMLayers", "mosaic"] 898.973 μs (5%) 2.99 MiB (1%) 40081
["SimpleSDMLayers", "nodata"] 2.488 μs (5%) 2.81 KiB (1%) 6
["SimpleSDMLayers", "quantize"] 1.423 ms (5%) 472.34 KiB (1%) 32
["SimpleSDMLayers", "rescale"] 1.166 ms (5%) 1.38 MiB (1%) 50012

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["SDeMo", "crossvalidate"]
  • ["SDeMo", "splits"]
  • ["SDeMo", "train"]
  • ["SimpleSDMLayers"]

Julia versioninfo

Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 24.04.2 LTS
  uname: Linux 6.11.0-1015-azure #15~24.04.1-Ubuntu SMP Thu May  1 02:52:08 UTC 2025 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1     0 MHz       1589 s          0 s        151 s       3416 s          0 s
       #2     0 MHz       1560 s          0 s        136 s       3468 s          0 s
       #3     0 MHz       2404 s          0 s        130 s       2628 s          0 s
       #4     0 MHz       3135 s          0 s        141 s       1880 s          0 s
  Memory: 15.620769500732422 GB (13681.90625 MB free)
  Uptime: 518.27 sec
  Load Avg:  1.05  1.52  0.94
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                         x86_64
CPU op-mode(s):                       32-bit, 64-bit
Address sizes:                        48 bits physical, 48 bits virtual
Byte Order:                           Little Endian
CPU(s):                               4
On-line CPU(s) list:                  0-3
Vendor ID:                            AuthenticAMD
Model name:                           AMD EPYC 7763 64-Core Processor
CPU family:                           25
Model:                                1
Thread(s) per core:                   2
Core(s) per socket:                   2
Socket(s):                            1
Stepping:                             1
BogoMIPS:                             4890.85
Flags:                                fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf tsc_known_freq pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves user_shstk clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                       AMD-V
Hypervisor vendor:                    Microsoft
Virtualization type:                  full
L1d cache:                            64 KiB (2 instances)
L1i cache:                            64 KiB (2 instances)
L2 cache:                             1 MiB (2 instances)
L3 cache:                             32 MiB (1 instance)
NUMA node(s):                         1
NUMA node0 CPU(s):                    0-3
Vulnerability Gather data sampling:   Not affected
Vulnerability Itlb multihit:          Not affected
Vulnerability L1tf:                   Not affected
Vulnerability Mds:                    Not affected
Vulnerability Meltdown:               Not affected
Vulnerability Mmio stale data:        Not affected
Vulnerability Reg file data sampling: Not affected
Vulnerability Retbleed:               Not affected
Vulnerability Spec rstack overflow:   Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:      Vulnerable
Vulnerability Spectre v1:             Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:             Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                  Not affected
Vulnerability Tsx async abort:        Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

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Update DocumenterVitepress to 0.2

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