Set up desktop distribution#7
Draft
mikoding9 wants to merge 4 commits into
Draft
Conversation
When a job directory already exists from a previous failed or cancelled run, git worktree add fails with exit 128 "already exists". Prune stale worktree refs and remove the directory beforehand so retries succeed.
Paths under ~/Library/Application Support contain a space. Storing the
shlex-quoted path in a plain string variable and expanding it unquoted
caused word-splitting, so Snakemake received a truncated path as a
positional target. Switch to a bash array and use "${SNKMT_ARGS[@]}"
to preserve the path as a single argument.
Author
|
@lkstrp Feel free to give feedback |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.