napari-superres: A collection of super-resolution microscopy FF-SRM methods.
Rocco D'Antuono, Adán Guerrero, Raúl Pinto Cámara, Paúl Hernández Herrera, Esley Torres Garcia, Haydee Hernández, Julián Mejía
Open-source implementation of methods for Fluorescence Fluctuation based Super Resolution Microscopy (FF-SRM):
Review: Alva et al., 2022. “Fluorescence Fluctuation-Based Super-Resolution Microscopy: Basic Concepts for an Easy Start.” Journal of Microscopy, August.
MSSR article: Torres-García, E., Pinto-Cámara, R., Linares, A. et al. Extending resolution within a single imaging frame. Nat Commun 13, 7452 (2022).
ESI article: Idir Yahiatene, Simon Hennig, Marcel Müller, Thomas Huser (2015/2016). "Entropy-based Super-resolution Imaging (ESI): From Disorder to Fine Detail" ACS Photonics 8, 2 (2015)
SOFI article: T. Dertinger, R. Colyer, G. Iyer, and J. Enderlein. Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI). PNAS 52, 106 (2009)
SRRF article: Gustafsson, N., Culley, S., Ashdown, G., D. M. Owen, P. Matos Pereira, and R. Henriques. Fast live-cell conventional fluorophore nanoscopy with ImageJ through super-resolution radial fluctuations. Nat Commun 7, 12471 (2016)
MUSICAL article: K. Agarwal and R. Machan, Multiple Signal Classification Algorithm for super-resolution fluorescence microscopy, Nature Communications, vol. 7, article id. 13752, (2016)
Methods implemented:
MSSR
ESI
SOFI
SRRF
MUSICAL
Split channels
