Skip to content

0.0.5

Choose a tag to compare

View all tags
@rxu17 rxu17 released this 20 Aug 01:08
· 45 commits to develop since this release
0.0.5
8cd6c8f
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

Highlights

  • Added ability to toggle use of global response set (GRS) or cohort data dictionary for mapping
  • Restructured tier1a replacement mapping tables for better maintainability
  • Updated case selection logic for age limits and handling of age variables
  • Implemented random selection of SDV cases based on percentage

Data Processing Changes

  • [GEN-1240] Add ability to toggle GRS mapping by @rxu17 in #162
  • [GEN-1744] Add tier1a replacement parameters and enable cohort specific logic by @danlu1 in #170
  • [GEN-1874] Convert tier1a replacement mapping table to long format by @danlu1 in #177
  • [GEN-1774] Add ability to replace with the non _DETAILED tier1a columns by @danlu1 in #178
  • [GEN-1837] Add age max filter by @xindiguo in #183
  • [GEN-1786] Update randomization method for SDV cases by @danlu1 in #186
  • [GEN-1468] Overwrite tier1 variable by @danlu1 in #156
  • [GEN-1836] Replace AGE_AT_SEQ_REPORT with AGE_AT_SEQ_REPORT_DAYS by @xindiguo in #182
  • [GEN-1783] Update perform_case_selection.R age max logic by @Chelsea-Na in #187

Bug Fixes

  • [GEN-1766] Fix merge_and_uncode_rca_uploads issue (missing slash) by @rxu17 in #171
  • [GEN-1767] Remove the unlisting of the form column code for production fileview table by @rxu17 in #172
  • [GEN-1943] Address nan in sample_id column when extracting site name by @danlu1 in #180
  • [GEN-1962] Add yesno mapping to the mapping when grs is not used by @xindiguo in #181
  • [GEN-1996] Fix bug with NAs in update table schema by @thomasyu888 in #189

Other

These are mainly config changes:

  • [DPE-1253] Add PR description template by @danlu1 in #176
  • [GEN-1727] Update config.json by @Chelsea-Na in #167
  • [GEN-1756] Update config.yaml to add VICC melanoma cases by @xindiguo in #169
  • [GEN-1702] Update config.json by @Chelsea-Na in #173
  • [GEN-1807] Update config.yaml by @Chelsea-Na in #174
  • [GEN-1889] Update config.json by @Chelsea-Na in #179
  • [GEN-1986] Update config.yaml by @Chelsea-Na in #184
  • [GEN-1986] Update config.yaml by @Chelsea-Na in #185
  • [GEN-1786] Update randomization method by @danlu1 in #188
  • [GEN-2039] Updated config for prostate 1.0-public release to use 10.3-consortium databy @Chelsea-Na in #191
  • [GEN-2038] Updated config for PANC 1.0-public release to use 9.5-consortium data by @Chelsea-Na in (#192
  • [GEN-2037] Updated config for BLADDER 1.0-public release to use 11.3-consortium data by @Chelsea-Na in #193
  • [GEN-2044] Updated esophago cohort case target numbers due to redistribution by @Chelsea-Na in #194
  • [GEN-1937] Updated configs for CRC and CRC2 cohorts to use 13.6-consortium data by @Chelsea-Na in #195
  • [GEN-2089] Updated config to bundle breast and RCC cohorts using 14.6-consortium data by @Chelsea-Na in #196
  • [GEN-2058] Plan to bundle breast and RCC cohorts once RCC data passes QA checks by @Chelsea-Na in #197
  • [GEN-2213] Updated MELANOMA case selection target counts by @Chelsea-Na in #199

Full Changelog: 0.0.4...0.0.5

Contributors

thomasyu888, xindiguo, and 3 other contributors
Assets 2
Loading