Comparative analysis between ChIP-seq and other NGS datasets requires prior characterization of their degree of technical similarity. NGS Q/C Generator infer Quality indicators from the distribution of sequenced reads associated to a particular NGS profile. Such information is then used for comparative purposes and for defining strategies aiming to improve the quality of the sample-derived datasets.
Improved and maintained by Matthias Blum and Pierre-Etienne Cholley.
- sort from the GNU coreutils
- Python 2.7 and the following packages:
- numpy
- scipy (requires
lapack-devel, andblas-devel) - matplotlib
- Pillow (requires
libzip-devel,libjpeg-devel, andlibpng-devel) - reportlab
- Bedtools
- Gnuplot 4.4+ (requires
libcairo2-dev,libgd2-xpm-dev, andlibpango1.0-dev)
Build the C tools by running sh build.sh in the utils directory.
Create a copy of config.ini.sample, rename it config.ini, and modify it (change the softwares section)