Converter page

dropdown with a list of converters to use

.ims to tif
.sld to tif
...

[DrSpringy]

User can select one file or multiple files
 to convert in a single job

Use metadata scrapers/Bioformats to Auto-detect file format and use appropriate converter automatically


• if a scraper isnt available for that format currently fall back to Bio-Formats?

User selects what output format,shape etc they want using checkboxes
 

• Output format

  • .tif
  • ome-tif
  • ome-zarr
  • .ims
  • arivis
  • etc

• Single File
  OR

• Split scenes/series

• Split timepoints
 

• Split channels
 

• Split Z-stacks 
 

Options

• Use Channel Names
• Append Additional Metadata to output file
• Generate separate .xml metadata file
• Sub-folder per Split
• compress output
  • .tar
  • .zip
• Send Copy To
  • Napari (DASK array)
  • FIJI

 

[DrSpringy]

https://napari.org/tutorials/applications/dask.html

[DrSpringy]

It's currently not obvious what the converter page is for, or what it does, we need to atleast clarify that if nothing else

[NickCondon]

https://github.com/sebi06/czitools

could be useful to implement a czi > ome zarr converter

[DrSpringy]

👍 Please excuse my brevity as I'm on my phone. On 13 Feb 2024, at 10:51 am, Nicholas Condon ***@***.***> wrote:  https://github.com/sebi06/czitools could be useful to implement a czi > ome zarr converter — Reply to this email directly, view it on GitHub<#29 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AVRN76FPWZ37YBMEM3GM2CDYTK2HDAVCNFSM5DFWYOIKU5DIOJSWCZC7NNSXTN2JONZXKZKDN5WW2ZLOOQ5TCOJTHE4TGOJQGEZQ>. You are receiving this because you commented.Message ID: ***@***.***>