GenBank_scripts

various scripts for editing genbank files, annotation files, submission files

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
check_new_cp_genomes		check_new_cp_genomes
split_fasta_files_for_processing		split_fasta_files_for_processing
.gitignore		.gitignore
AFLP_replicate_analysis.py		AFLP_replicate_analysis.py
GC_content.py		GC_content.py
Ouput.fasta		Ouput.fasta
README.md		README.md
add_contig_proportion.py		add_contig_proportion.py
add_product.py		add_product.py
adjust_numbers_in_sequin_file.py		adjust_numbers_in_sequin_file.py
blast_out_compare.py		blast_out_compare.py
blast_out_compare_workswell.py		blast_out_compare_workswell.py
blast_out_crosscheck.py		blast_out_crosscheck.py
check_new_cp_genomesaccession_numbers.csv		check_new_cp_genomesaccession_numbers.csv
contig_shortener.py		contig_shortener.py
contig_splitter.py		contig_splitter.py
contig_splitter_test_file.fasta		contig_splitter_test_file.fasta
extract_contigs.py		extract_contigs.py
extract_cp_contigs.py		extract_cp_contigs.py
extracted_output.fasta		extracted_output.fasta
fastq_to_fasta.py		fastq_to_fasta.py
gb2tbl.py		gb2tbl.py
gene_find.py		gene_find.py
outfiletest.txt		outfiletest.txt
outfiletest2.txt		outfiletest2.txt
parse_ncbi_fasta_header.pl		parse_ncbi_fasta_header.pl
parse_ncbi_fasta_header.py		parse_ncbi_fasta_header.py
short_seq.txt		short_seq.txt
strip_contigs.py		strip_contigs.py
stripped_output.fasta		stripped_output.fasta
test.fasta		test.fasta
test_contig_list		test_contig_list
test_input_for_contig_shortener.fasta		test_input_for_contig_shortener.fasta

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