A package that for applying a fast implementation of Fisher's exact test to observations in a pandas DataFrame.

Materials for the SEATRAC Hack Day 2025

A package that is useful for clustering high-dimensional instances (e.g. T cell receptors) and testing whether clusters of instances are differentially abundant in two or more categorical condition…

Python-based utilities for data analysis authored by a computational biologist.

Generate peptides to be used for epitope mapping, maximizing coverage of a sequence alignment.

Python package for computing and plotting sequence logos, with output as SVG or matplotlib

A small package that efficiently computes distances between genetic sequences. Can accommodate similarity matrices, sequences of different lengths and custom metrics.

Bootstrap testing for a beta-binomial regression model.

Implementation of k-medoids clustering (PAM) accepts scipy.sparse distance matrix, using numba for efficiency

Dockerfile specifying programs for processing RNA seq data

Python-based HLA:peptide binding prediction cache and IEDB-tool wrapper

Parsing and HLA predicted binding affinities for the "A-list" and "B-list" HIV epitopes provided by LANL

Create modules of co-signaling cytokines for analysis of multiplexed cytokine data (e.g. Luminex)

Python module containing optimized routines for computing genetic distances.