Stitch images and provide maps - #2
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cccoolll merged 38 commits intoJan 2, 2025
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… and save output in a dedicated folder
… and save output in a dedicated folder
…/cccoolll/squid-control into Streaming-Microscopy-Imaging-Map
…al in Microscope setup
This was referenced Dec 9, 2024
…ingle FOV processing
…e channel handling; adjust pyramid levels and fix tile fetching paths
Update image dimensions and channel references in preview and streaming scripts; add error handling for tile fetching
…e streaming_imaging_map.py to test_ome_zarr_openlayer_locally.py Remove unused code.
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New feature: image stitching and viewing tools.The most important changes include the addition of new functions for image processing, the creation of a web viewer for microscopy images, the implementation of multi-resolution image saving, and the development of a streaming server for image tiles.
Tasks
Implement Image-stitching
Read the zarr image & provide tiles for the OpenLayers
Update local tile server to hypha-rpc