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[SPARK-12625][SPARKR][SQL] replace R usage of Spark SQL deprecated API#10584

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[SPARK-12625][SPARKR][SQL] replace R usage of Spark SQL deprecated API#10584
felixcheung wants to merge 4 commits into
apache:masterfrom
felixcheung:rremovedeprecated

fix parquetFile and jsonRDD

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