Circle_graph.py

Circles correspond to expected equvalent diamteres (dotted line), mean (solid line) and sd. dev (semitransparent line) of objects.

AN vero + staridst_masks.cpproj

Cell profiler pipeline for Vero and similar cells after stardist

Cell profiler pipeline for FH without stardist

Script for postprocessing CellProfiler data and drawing graphs

Name		Name	Last commit message	Last commit date
Latest commit History 69 Commits
Data examples		Data examples
Thumbnails		Thumbnails
AN FH + stardist_masks.cpproj		AN FH + stardist_masks.cpproj
AN FH wo stardist_masks.cpproj		AN FH wo stardist_masks.cpproj
AN vero.cpproj		AN vero.cpproj
CP_AN_table_processing.ipynb		CP_AN_table_processing.ipynb
CP_AN_table_processing.py		CP_AN_table_processing.py
CP_spheroids_processing.py		CP_spheroids_processing.py
Circle_graph.py		Circle_graph.py
FB_files_processing.ipynb		FB_files_processing.ipynb
Flow cytometry.ipynb		Flow cytometry.ipynb
Magnetic_field_data_processing.ipynb		Magnetic_field_data_processing.ipynb
Magnetic_system_plot_FEMM.ipynb		Magnetic_system_plot_FEMM.ipynb
Napari_spheroids		Napari_spheroids
README.md		README.md
Rename_file_in_folder.py		Rename_file_in_folder.py
Spheroids 600-20.cpproj		Spheroids 600-20.cpproj
Spheroids measuring.cpproj		Spheroids measuring.cpproj
Spheroids measuring_for_illustration.cpproj		Spheroids measuring_for_illustration.cpproj
Spheroids segmentation 600-20.ilp		Spheroids segmentation 600-20.ilp
Spheroids segmentation single.ilp		Spheroids segmentation single.ilp
Spheroids segmentation.ilp		Spheroids segmentation.ilp
Spheroids wo ilastik.cpproj		Spheroids wo ilastik.cpproj
Spheroids_stardist.ipynb		Spheroids_stardist.ipynb
VSM_files_processing.ipynb		VSM_files_processing.ipynb