Divisualisation

Visualize cell tracking edge errors computed via traccuracy in napari.

2D tracking (bacteria)	3D tracking (C. elegans nuclei)
divisualisation_2d.mp4	divisualisation_3d.mp4

We originally introduced these visualisations to compare our results in Trackastra: Transformer-based cell tracking for live-cell microscopy to other cell tracking algorithms.

divisualisation_comparison.mp4

Installation

• Install napari
• Install this repo

  pip install git+https://github.com/bentaculum/divisualisation.git
  

Usage

Run example_2d.py or example_3d.py in ipython.