Improve maf handling#77

Merged

nsoranzo merged 18 commits into

lldelisle:improveMafHandling

Dec 11, 2021

Commits on Jun 11, 2021

adapt all methods of align to support empty component
Lucille Delisle
committed
fix fuse for synteny_right prevent trying to fuse when empty lines
Lucille Delisle
committed
use method remove_all_gap_columns
Lucille Delisle
committed
use parse_e_rows=True in scripts
Lucille Delisle
committed

Commits on Jun 14, 2021

fix maf_chunk
Lucille Delisle
committed
add tests for index and maf_extract_ranges_indexed
Lucille Delisle
committed
add tests for maf_chunk
Lucille Delisle
committed
fix syntheny right in slice
Lucille Delisle
committed
fix maf_extract_ranges_indexed for 'e' lines with size 0
Lucille Delisle
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add note in maf_extract_ranges
Lucille Delisle
committed
add tests for maf_extract_ranges
Lucille Delisle
committed
add test for limit_to_species
Lucille Delisle
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add maf_select_tests
Lucille Delisle
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fix maf_shuffle_column import
Lucille Delisle
committed

Commits on Jul 8, 2021

linting
Lucille Delisle
committed
separate Third Party import from Stdlib import
Lucille Delisle
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use output files to have both tests and linting passing
Lucille Delisle
committed

Commits on Jul 9, 2021

Merge branch 'main' of github.com:bxlab/bx-python into improveMafHandling
Lucille Delisle
committed