This script takes whole slide images (typically .svs or .ndpi files; either from biospsies or Cytosponge etc) as an input and returns an image file (typically .png file) of the mask of where the ti…

A generator library for concise, unambiguous and URL-safe UUIDs.

Colorize vim-devicons with the current colorscheme

Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images

A Rust implementation of the Polylabel algorithm, with FFI.

NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation

QuPath - Open-source bioimage analysis for research

TexLab extension for coc.nvim

Create matplotlib plots with broken axes

unet for image segmentation

Coincides with blogpost for using geojson and shapely

python binding for libvips using cffi

GUI wrapped around anonymise label for SVS and NDPI whole slide images

Latex code for making neural networks diagrams

Publication-ready NN-architecture schematics.

This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images

Open source tools for computational pathology - Nature BME

(Do)cumentation (Ge)nerator for nearly 20 languages 📚 Generate proper code documentation with a single keypress. ⚡️🔥

Background Music, a macOS audio utility: automatically pause your music, set individual apps' volumes and record system audio.

Python code used to train and evaluate segmentation networks for renal histopathological analysis

Some stain normalization code

List of academic institutes/companies working on computer-based digital pathology image analysis

A tree explorer plugin for vim.

Seamless navigation between tmux panes and vim splits

Delete the label from a whole-slide image