## Follow these commands to install on Mac

## Install homebrew for compilers and dependencies
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
brew tap homebrew/versions
brew tap homebrew/science

## Get gcc with support for openmp (this can take a while)
brew install gcc --without-multilib

## Set gcc as default compiler (rather than clang), and build things from source
## To make this permanent, put in ~/.bashrc
export HOMEBREW_CC=gcc-5
export HOMEBREW_CXX=g++-5
export HOMEBREW_BUILD_FROM_SOURCE=TRUE

## Check
brew --env

## Some general dependencies
brew install automake
brew install autoconf
brew install libtool

## PHLAWD dependencies
brew install muscle
brew install quicktree
brew install mafft

## Compile PHLAWD
cd phlawd/src
autoreconf -fi
./configure CC=gcc-5 CXX=g++-5
make
sudo make install